Results 41 - 51 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 69368 | 0.67 | 0.999675 |
Target: 5'- gGAGAucGGGCGCgacgaaGCGAACAGAa -3' miRNA: 3'- gCUUUcuCUCGCGaug---UGUUUGUCUg -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 104901 | 0.67 | 0.999675 |
Target: 5'- ----cGAGGcgccGUGCUGCuCGAGCAGGCg -3' miRNA: 3'- gcuuuCUCU----CGCGAUGuGUUUGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 149668 | 0.67 | 0.999744 |
Target: 5'- cCGAgcGGGGGCGCgucGCGCucGACuGGCc -3' miRNA: 3'- -GCUuuCUCUCGCGa--UGUGu-UUGuCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 116039 | 0.67 | 0.9998 |
Target: 5'- cCGGAgaGGAGAGCGCagGgGgGAGCGcGACu -3' miRNA: 3'- -GCUU--UCUCUCGCGa-UgUgUUUGU-CUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 9897 | 0.67 | 0.9998 |
Target: 5'- cCGAuAGAGAGCcacGCUAUcgaGCAcAgGGACg -3' miRNA: 3'- -GCUuUCUCUCG---CGAUG---UGUuUgUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 126696 | 0.67 | 0.9998 |
Target: 5'- gGAGGGAgGGGCGC--CGCGGACucgGGGCg -3' miRNA: 3'- gCUUUCU-CUCGCGauGUGUUUG---UCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 179619 | 0.66 | 0.99986 |
Target: 5'- gCGAgcGAcugccGGGCGCUGCGacggaaaggagaaguCAGGCGGGCu -3' miRNA: 3'- -GCUuuCU-----CUCGCGAUGU---------------GUUUGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 125327 | 0.66 | 0.99988 |
Target: 5'- cCGAGccGGAGCGCgccacgGCGCAccGGCAGcCg -3' miRNA: 3'- -GCUUucUCUCGCGa-----UGUGU--UUGUCuG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 122760 | 0.66 | 0.99988 |
Target: 5'- uCGAGcuGAucGAGCGCUcCGCGAGCGGcCu -3' miRNA: 3'- -GCUUu-CU--CUCGCGAuGUGUUUGUCuG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 125576 | 0.66 | 0.99993 |
Target: 5'- aGGAGGAGAGCGaca-GCGAGgAGuCg -3' miRNA: 3'- gCUUUCUCUCGCgaugUGUUUgUCuG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 51272 | 0.66 | 0.99993 |
Target: 5'- cCGGGAGGcaGGCGCggcccGCcCGAACGGGCa -3' miRNA: 3'- -GCUUUCUc-UCGCGa----UGuGUUUGUCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home