miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 3' -47.6 NC_002794.1 + 122760 0.66 0.99988
Target:  5'- uCGAGcuGAucGAGCGCUcCGCGAGCGGcCu -3'
miRNA:   3'- -GCUUu-CU--CUCGCGAuGUGUUUGUCuG- -5'
10710 3' -47.6 NC_002794.1 + 116400 0.67 0.999591
Target:  5'- aCGAAGGuGuGGCGggGCGCGAGCaccaGGGCg -3'
miRNA:   3'- -GCUUUCuC-UCGCgaUGUGUUUG----UCUG- -5'
10710 3' -47.6 NC_002794.1 + 116039 0.67 0.9998
Target:  5'- cCGGAgaGGAGAGCGCagGgGgGAGCGcGACu -3'
miRNA:   3'- -GCUU--UCUCUCGCGa-UgUgUUUGU-CUG- -5'
10710 3' -47.6 NC_002794.1 + 114404 0.69 0.99792
Target:  5'- uGAuGGAGcAGCGCgucguaACACAGcccGCGGACc -3'
miRNA:   3'- gCUuUCUC-UCGCGa-----UGUGUU---UGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 113143 0.68 0.998566
Target:  5'- gGAAGGGcGGGCGCgucagcguguaGCGCGcGCGGGCg -3'
miRNA:   3'- gCUUUCU-CUCGCGa----------UGUGUuUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 111195 0.69 0.996508
Target:  5'- -cGAAGAGguugccguAGCGCUGCGCGuAGCGGGg -3'
miRNA:   3'- gcUUUCUC--------UCGCGAUGUGU-UUGUCUg -5'
10710 3' -47.6 NC_002794.1 + 110922 0.68 0.998566
Target:  5'- -cGAAGAGGuCGCU-CACGuACAGACa -3'
miRNA:   3'- gcUUUCUCUcGCGAuGUGUuUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 110063 0.71 0.990057
Target:  5'- cCGucGGAGAGCGCggauCGCGgucGugAGACg -3'
miRNA:   3'- -GCuuUCUCUCGCGau--GUGU---UugUCUG- -5'
10710 3' -47.6 NC_002794.1 + 108660 0.69 0.99792
Target:  5'- gGAAAGAGaAGCuGCUcuGCGCu--CAGACc -3'
miRNA:   3'- gCUUUCUC-UCG-CGA--UGUGuuuGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 108158 0.69 0.997805
Target:  5'- ----cGGGAGCGCcgGCGCGAagacgccgcgacgcGCGGACu -3'
miRNA:   3'- gcuuuCUCUCGCGa-UGUGUU--------------UGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 107638 0.67 0.999488
Target:  5'- aCGAAGaGGAGCGCgaacguCGCGAGgAGAg -3'
miRNA:   3'- -GCUUUcUCUCGCGau----GUGUUUgUCUg -5'
10710 3' -47.6 NC_002794.1 + 106296 0.68 0.999349
Target:  5'- gCGAGAGAcgacgacgacgacGAGCGCgACGCGcgcGACGGGu -3'
miRNA:   3'- -GCUUUCU-------------CUCGCGaUGUGU---UUGUCUg -5'
10710 3' -47.6 NC_002794.1 + 104901 0.67 0.999675
Target:  5'- ----cGAGGcgccGUGCUGCuCGAGCAGGCg -3'
miRNA:   3'- gcuuuCUCU----CGCGAUGuGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 98277 0.71 0.992466
Target:  5'- uCGAAcaacggcgcaccGGGGAGaUGCUGCACGAGCuGAg -3'
miRNA:   3'- -GCUU------------UCUCUC-GCGAUGUGUUUGuCUg -5'
10710 3' -47.6 NC_002794.1 + 96879 0.68 0.998566
Target:  5'- aCGGAcGGuGGCGCUACG-GGGCAGGCg -3'
miRNA:   3'- -GCUUuCUcUCGCGAUGUgUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 83053 0.71 0.987082
Target:  5'- gCGGAGGAcGAGCGCc-CACccACGGGCg -3'
miRNA:   3'- -GCUUUCU-CUCGCGauGUGuuUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 82829 0.73 0.961121
Target:  5'- uCGAGAGAcgcacggcGAGCGCgaGCGCGAGCGcGACc -3'
miRNA:   3'- -GCUUUCU--------CUCGCGa-UGUGUUUGU-CUG- -5'
10710 3' -47.6 NC_002794.1 + 69368 0.67 0.999675
Target:  5'- gGAGAucGGGCGCgacgaaGCGAACAGAa -3'
miRNA:   3'- gCUUUcuCUCGCGaug---UGUUUGUCUg -5'
10710 3' -47.6 NC_002794.1 + 51272 0.66 0.99993
Target:  5'- cCGGGAGGcaGGCGCggcccGCcCGAACGGGCa -3'
miRNA:   3'- -GCUUUCUc-UCGCGa----UGuGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 44355 0.71 0.992466
Target:  5'- gCGAGAccGAGAGCGCg--GCGGGCGcGACg -3'
miRNA:   3'- -GCUUU--CUCUCGCGaugUGUUUGU-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.