miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 3' -47.6 NC_002794.1 + 22162 0.68 0.999213
Target:  5'- uCGAGuGAGcaccGGCGCUcCACGGACGGcCg -3'
miRNA:   3'- -GCUUuCUC----UCGCGAuGUGUUUGUCuG- -5'
10710 3' -47.6 NC_002794.1 + 113143 0.68 0.998566
Target:  5'- gGAAGGGcGGGCGCgucagcguguaGCGCGcGCGGGCg -3'
miRNA:   3'- gCUUUCU-CUCGCGa----------UGUGUuUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 110922 0.68 0.998566
Target:  5'- -cGAAGAGGuCGCU-CACGuACAGACa -3'
miRNA:   3'- gcUUUCUCUcGCGAuGUGUuUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 96879 0.68 0.998566
Target:  5'- aCGGAcGGuGGCGCUACG-GGGCAGGCg -3'
miRNA:   3'- -GCUUuCUcUCGCGAUGUgUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 152974 0.69 0.998268
Target:  5'- uGGucGGG-GCGCUuCGCcGACAGGCg -3'
miRNA:   3'- gCUuuCUCuCGCGAuGUGuUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 44307 0.69 0.998268
Target:  5'- gCGAGgcGGGGAGCGac-CGCGAGCGcGGCg -3'
miRNA:   3'- -GCUU--UCUCUCGCgauGUGUUUGU-CUG- -5'
10710 3' -47.6 NC_002794.1 + 114404 0.69 0.99792
Target:  5'- uGAuGGAGcAGCGCgucguaACACAGcccGCGGACc -3'
miRNA:   3'- gCUuUCUC-UCGCGa-----UGUGUU---UGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 108660 0.69 0.99792
Target:  5'- gGAAAGAGaAGCuGCUcuGCGCu--CAGACc -3'
miRNA:   3'- gCUUUCUC-UCG-CGA--UGUGuuuGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 108158 0.69 0.997805
Target:  5'- ----cGGGAGCGCcgGCGCGAagacgccgcgacgcGCGGACu -3'
miRNA:   3'- gcuuuCUCUCGCGa-UGUGUU--------------UGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 139978 0.69 0.997515
Target:  5'- aGAAAGAgauGAGCGCgACGCgGGACGGuGCg -3'
miRNA:   3'- gCUUUCU---CUCGCGaUGUG-UUUGUC-UG- -5'
10710 3' -47.6 NC_002794.1 + 123605 0.69 0.997471
Target:  5'- cCGGAAcgccuguGGGAcGCGCUGCGCGA--GGACa -3'
miRNA:   3'- -GCUUU-------CUCU-CGCGAUGUGUUugUCUG- -5'
10710 3' -47.6 NC_002794.1 + 131712 0.69 0.997047
Target:  5'- cCGGAccccGAGAGCGa---GCGAGCGGGCg -3'
miRNA:   3'- -GCUUu---CUCUCGCgaugUGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 145234 0.69 0.996508
Target:  5'- uCGGAGGcgcGcGCGCUGCGgAAGCGGAUc -3'
miRNA:   3'- -GCUUUCu--CuCGCGAUGUgUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 111195 0.69 0.996508
Target:  5'- -cGAAGAGguugccguAGCGCUGCGCGuAGCGGGg -3'
miRNA:   3'- gcUUUCUC--------UCGCGAUGUGU-UUGUCUg -5'
10710 3' -47.6 NC_002794.1 + 10866 0.69 0.996508
Target:  5'- uCGGAAGccGAGCGUgaccgACgACGGGCGGGCg -3'
miRNA:   3'- -GCUUUCu-CUCGCGa----UG-UGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 30763 0.69 0.996449
Target:  5'- uGGAGGAucugGaAGCGCUGCACGAagaugucGCGGAa -3'
miRNA:   3'- gCUUUCU----C-UCGCGAUGUGUU-------UGUCUg -5'
10710 3' -47.6 NC_002794.1 + 134008 0.7 0.99589
Target:  5'- cCGGGuGcGAGCGCUGCACGGuCGGGu -3'
miRNA:   3'- -GCUUuCuCUCGCGAUGUGUUuGUCUg -5'
10710 3' -47.6 NC_002794.1 + 155531 0.7 0.99589
Target:  5'- uCGGGuuuGGAGCuGUUGCACcGACGGACg -3'
miRNA:   3'- -GCUUuc-UCUCG-CGAUGUGuUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 139195 0.7 0.995478
Target:  5'- uCGAAGGccaugacggcgacgaAGGGCGuCUGCAgGAGCAGGa -3'
miRNA:   3'- -GCUUUC---------------UCUCGC-GAUGUgUUUGUCUg -5'
10710 3' -47.6 NC_002794.1 + 182449 0.7 0.995185
Target:  5'- uCGGucucGGAGAGCGCggcggUGCGCGgcgucAGCAGAUa -3'
miRNA:   3'- -GCUu---UCUCUCGCG-----AUGUGU-----UUGUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.