miRNA display CGI


Results 41 - 60 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 195617 0.75 0.15279
Target:  5'- gGCGUCCGGCCcaaacgGCCGGCGaCGacgaGCCGCa- -3'
miRNA:   3'- -CGCAGGUCGG------CGGCCGC-GC----CGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 58017 0.75 0.152436
Target:  5'- cCGgggCC-GCCGCCGGCGaacccgcCGcGCCGCCCg -3'
miRNA:   3'- cGCa--GGuCGGCGGCCGC-------GC-CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 13111 0.75 0.15279
Target:  5'- uGCGUUCGGCgggguCGCC-GCGCGGCuCGCUCg -3'
miRNA:   3'- -CGCAGGUCG-----GCGGcCGCGCCG-GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 181524 0.75 0.152436
Target:  5'- uCGUCCGuucgcccGCCGCCGGCGggccggcgcucuCGGUCGCCg -3'
miRNA:   3'- cGCAGGU-------CGGCGGCCGC------------GCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 49439 0.75 0.142477
Target:  5'- gGCGUCCGGCgcggucguCGCCguGGCGCcgccgugaccGGCCGCCg -3'
miRNA:   3'- -CGCAGGUCG--------GCGG--CCGCG----------CCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 54841 0.75 0.145842
Target:  5'- gGCGgcacCCAacGCCcguagGCCGGCGCgGGCCGCCg -3'
miRNA:   3'- -CGCa---GGU--CGG-----CGGCCGCG-CCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 34732 0.75 0.137241
Target:  5'- cGCGggCGGCCGCagagcgcgcgaCGGCGCggugggacgcggcacGGCCGCCCg -3'
miRNA:   3'- -CGCagGUCGGCG-----------GCCGCG---------------CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 30069 0.75 0.142477
Target:  5'- gGgGUCCGGUCGCCcggucgacgagGcGCGCGGCCGguCCCg -3'
miRNA:   3'- -CgCAGGUCGGCGG-----------C-CGCGCCGGC--GGG- -5'
10710 5' -66.9 NC_002794.1 + 112233 0.75 0.141482
Target:  5'- gGCGUCCAgggccgccgcgaacGCCGCCGGCGggacCGGCgucuCGUCCu -3'
miRNA:   3'- -CGCAGGU--------------CGGCGGCCGC----GCCG----GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 17911 0.75 0.148586
Target:  5'- gGCGUCCGGCagcucaccaccgGCCGGCuccccgaccugGCGGCCaCCCg -3'
miRNA:   3'- -CGCAGGUCGg-----------CGGCCG-----------CGCCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 180005 0.75 0.156376
Target:  5'- gGCGggcCCGGCCacgacgaCGGcCGCGGCCGUCCg -3'
miRNA:   3'- -CGCa--GGUCGGcg-----GCC-GCGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 124399 0.75 0.142477
Target:  5'- cGCGUcgCCGGUCGUCGGgGC-GCCGUCCg -3'
miRNA:   3'- -CGCA--GGUCGGCGGCCgCGcCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 37908 0.75 0.139183
Target:  5'- aGCGgcucgCCGGCCucaacgucaaCCGcCGCGGCCGCCCg -3'
miRNA:   3'- -CGCa----GGUCGGc---------GGCcGCGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 153662 0.75 0.13596
Target:  5'- cGCGUCCGGCCGCCGGuUGUgaGGCucgaCGCgCg -3'
miRNA:   3'- -CGCAGGUCGGCGGCC-GCG--CCG----GCGgG- -5'
10710 5' -66.9 NC_002794.1 + 107050 0.75 0.139183
Target:  5'- cGCGUCggaGGCgGCgGGCGCGgcGCCGCCg -3'
miRNA:   3'- -CGCAGg--UCGgCGgCCGCGC--CGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 141626 0.75 0.139183
Target:  5'- cGCgGUCUAGCgacgggaagGCCGGCGUGGCCGCggCCg -3'
miRNA:   3'- -CG-CAGGUCGg--------CGGCCGCGCCGGCG--GG- -5'
10710 5' -66.9 NC_002794.1 + 154365 0.75 0.149279
Target:  5'- cGCgGUCCAgGCCGCggcggCGGCG-GGCaCGCCCg -3'
miRNA:   3'- -CG-CAGGU-CGGCG-----GCCGCgCCG-GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 182026 0.75 0.145502
Target:  5'- gGCGUCCgGGCCGCCGGCGaccagaccaGGUccugcgcguagggCGCCUg -3'
miRNA:   3'- -CGCAGG-UCGGCGGCCGCg--------CCG-------------GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 93461 0.75 0.142477
Target:  5'- gGCGUCCcGCCGCCGcaCGUGGCCaCCUu -3'
miRNA:   3'- -CGCAGGuCGGCGGCc-GCGCCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 195206 0.75 0.145842
Target:  5'- -gGUCCAGCCccGCCaGCuGCGGCagcaGCCCg -3'
miRNA:   3'- cgCAGGUCGG--CGGcCG-CGCCGg---CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.