Results 61 - 80 of 539 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10710 | 5' | -66.9 | NC_002794.1 | + | 124445 | 0.74 | 0.181173 |
Target: 5'- cGCGUCCucgcuuucucguucGUCGUCGGCGUcGCCGCCg -3' miRNA: 3'- -CGCAGGu-------------CGGCGGCCGCGcCGGCGGg -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 38557 | 0.74 | 0.160037 |
Target: 5'- cCG-CCAGaagcCCGCCGGCGCcucgacggagucGGCCGCCUc -3' miRNA: 3'- cGCaGGUC----GGCGGCCGCG------------CCGGCGGG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 37740 | 0.74 | 0.175467 |
Target: 5'- gGCGccgCCGGCgG-CGGCGCGGCgGCgCCg -3' miRNA: 3'- -CGCa--GGUCGgCgGCCGCGCCGgCG-GG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 90465 | 0.74 | 0.175467 |
Target: 5'- gGCGa--GGCCGCgcgCGGCGgGGCCGCCg -3' miRNA: 3'- -CGCaggUCGGCG---GCCGCgCCGGCGGg -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 183447 | 0.74 | 0.167593 |
Target: 5'- gGCGcccgCCA-CCGCCGGCGC--CCGCCCg -3' miRNA: 3'- -CGCa---GGUcGGCGGCCGCGccGGCGGG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 55014 | 0.74 | 0.179526 |
Target: 5'- gGCGUCC-GCCGCC-GCGCcGCCGCg- -3' miRNA: 3'- -CGCAGGuCGGCGGcCGCGcCGGCGgg -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 130629 | 0.74 | 0.167593 |
Target: 5'- gGUGUUCGGCguCGCCGGCcCGcccGCCGCCCc -3' miRNA: 3'- -CGCAGGUCG--GCGGCCGcGC---CGGCGGG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 32247 | 0.74 | 0.167593 |
Target: 5'- -gGUCCugcAGCUGCUGGCGCucgacGGCCGgCCg -3' miRNA: 3'- cgCAGG---UCGGCGGCCGCG-----CCGGCgGG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 105498 | 0.74 | 0.179526 |
Target: 5'- cGUGgagCCGccGCCGCCGGuCGC-GCCGUCCg -3' miRNA: 3'- -CGCa--GGU--CGGCGGCC-GCGcCGGCGGG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 61534 | 0.74 | 0.163776 |
Target: 5'- gGCGgccgCCGcgaagacgacGCCGCCgcGGCgGCGGCCGCCg -3' miRNA: 3'- -CGCa---GGU----------CGGCGG--CCG-CGCCGGCGGg -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 44539 | 0.74 | 0.163776 |
Target: 5'- cGCG-CCGucgucGUCGCCGGCgGCGGC-GCCCg -3' miRNA: 3'- -CGCaGGU-----CGGCGGCCG-CGCCGgCGGG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 19515 | 0.74 | 0.163776 |
Target: 5'- cGCGccgCuCGGagCGCCGGCGCGGCgCgGCCCg -3' miRNA: 3'- -CGCa--G-GUCg-GCGGCCGCGCCG-G-CGGG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 189903 | 0.74 | 0.17149 |
Target: 5'- cCGUCagcGCCGCC-GCGCGaCCGCCCg -3' miRNA: 3'- cGCAGgu-CGGCGGcCGCGCcGGCGGG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 47953 | 0.74 | 0.17149 |
Target: 5'- cGCGUCCcGgCGCCGGCuggGCGaCCGCCg -3' miRNA: 3'- -CGCAGGuCgGCGGCCG---CGCcGGCGGg -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 101571 | 0.74 | 0.179526 |
Target: 5'- gGCGggagugCCGGCCGCCgcggccgggggGGCGgGuGCCgGCCCg -3' miRNA: 3'- -CGCa-----GGUCGGCGG-----------CCGCgC-CGG-CGGG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 16911 | 0.74 | 0.179526 |
Target: 5'- cGCGaUCCgAGCCGCCgacugucgucGGCGcCGaGCCGCCa -3' miRNA: 3'- -CGC-AGG-UCGGCGG----------CCGC-GC-CGGCGGg -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 99805 | 0.74 | 0.175467 |
Target: 5'- cGCGcCgCGGgCGCCGGCGCcgucGGCCGaCCUg -3' miRNA: 3'- -CGCaG-GUCgGCGGCCGCG----CCGGC-GGG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 17427 | 0.74 | 0.163776 |
Target: 5'- cGCGgucUCCGcGCCGCCGGCGCucgGGcCCGCgaCCg -3' miRNA: 3'- -CGC---AGGU-CGGCGGCCGCG---CC-GGCG--GG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 137594 | 0.74 | 0.171097 |
Target: 5'- uGCGgggagCC-GCCGCCGGCggucgcgGCGGCggUGCCCa -3' miRNA: 3'- -CGCa----GGuCGGCGGCCG-------CGCCG--GCGGG- -5' |
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10710 | 5' | -66.9 | NC_002794.1 | + | 48627 | 0.73 | 0.205667 |
Target: 5'- cGCGgagCGGCCGUCGGggccCGCGaGCCGCCg -3' miRNA: 3'- -CGCag-GUCGGCGGCC----GCGC-CGGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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