miRNA display CGI


Results 61 - 80 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 38557 0.74 0.160037
Target:  5'- cCG-CCAGaagcCCGCCGGCGCcucgacggagucGGCCGCCUc -3'
miRNA:   3'- cGCaGGUC----GGCGGCCGCG------------CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 44539 0.74 0.163776
Target:  5'- cGCG-CCGucgucGUCGCCGGCgGCGGC-GCCCg -3'
miRNA:   3'- -CGCaGGU-----CGGCGGCCG-CGCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 17427 0.74 0.163776
Target:  5'- cGCGgucUCCGcGCCGCCGGCGCucgGGcCCGCgaCCg -3'
miRNA:   3'- -CGC---AGGU-CGGCGGCCGCG---CC-GGCG--GG- -5'
10710 5' -66.9 NC_002794.1 + 61534 0.74 0.163776
Target:  5'- gGCGgccgCCGcgaagacgacGCCGCCgcGGCgGCGGCCGCCg -3'
miRNA:   3'- -CGCa---GGU----------CGGCGG--CCG-CGCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 19515 0.74 0.163776
Target:  5'- cGCGccgCuCGGagCGCCGGCGCGGCgCgGCCCg -3'
miRNA:   3'- -CGCa--G-GUCg-GCGGCCGCGCCG-G-CGGG- -5'
10710 5' -66.9 NC_002794.1 + 183447 0.74 0.167593
Target:  5'- gGCGcccgCCA-CCGCCGGCGC--CCGCCCg -3'
miRNA:   3'- -CGCa---GGUcGGCGGCCGCGccGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 32247 0.74 0.167593
Target:  5'- -gGUCCugcAGCUGCUGGCGCucgacGGCCGgCCg -3'
miRNA:   3'- cgCAGG---UCGGCGGCCGCG-----CCGGCgGG- -5'
10710 5' -66.9 NC_002794.1 + 130629 0.74 0.167593
Target:  5'- gGUGUUCGGCguCGCCGGCcCGcccGCCGCCCc -3'
miRNA:   3'- -CGCAGGUCG--GCGGCCGcGC---CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 137594 0.74 0.171097
Target:  5'- uGCGgggagCC-GCCGCCGGCggucgcgGCGGCggUGCCCa -3'
miRNA:   3'- -CGCa----GGuCGGCGGCCG-------CGCCG--GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 189903 0.74 0.17149
Target:  5'- cCGUCagcGCCGCC-GCGCGaCCGCCCg -3'
miRNA:   3'- cGCAGgu-CGGCGGcCGCGCcGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 47953 0.74 0.17149
Target:  5'- cGCGUCCcGgCGCCGGCuggGCGaCCGCCg -3'
miRNA:   3'- -CGCAGGuCgGCGGCCG---CGCcGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 90465 0.74 0.175467
Target:  5'- gGCGa--GGCCGCgcgCGGCGgGGCCGCCg -3'
miRNA:   3'- -CGCaggUCGGCG---GCCGCgCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 37740 0.74 0.175467
Target:  5'- gGCGccgCCGGCgG-CGGCGCGGCgGCgCCg -3'
miRNA:   3'- -CGCa--GGUCGgCgGCCGCGCCGgCG-GG- -5'
10710 5' -66.9 NC_002794.1 + 99805 0.74 0.175467
Target:  5'- cGCGcCgCGGgCGCCGGCGCcgucGGCCGaCCUg -3'
miRNA:   3'- -CGCaG-GUCgGCGGCCGCG----CCGGC-GGG- -5'
10710 5' -66.9 NC_002794.1 + 105498 0.74 0.179526
Target:  5'- cGUGgagCCGccGCCGCCGGuCGC-GCCGUCCg -3'
miRNA:   3'- -CGCa--GGU--CGGCGGCC-GCGcCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 55014 0.74 0.179526
Target:  5'- gGCGUCC-GCCGCC-GCGCcGCCGCg- -3'
miRNA:   3'- -CGCAGGuCGGCGGcCGCGcCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 101571 0.74 0.179526
Target:  5'- gGCGggagugCCGGCCGCCgcggccgggggGGCGgGuGCCgGCCCg -3'
miRNA:   3'- -CGCa-----GGUCGGCGG-----------CCGCgC-CGG-CGGG- -5'
10710 5' -66.9 NC_002794.1 + 16911 0.74 0.179526
Target:  5'- cGCGaUCCgAGCCGCCgacugucgucGGCGcCGaGCCGCCa -3'
miRNA:   3'- -CGC-AGG-UCGGCGG----------CCGC-GC-CGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 124445 0.74 0.181173
Target:  5'- cGCGUCCucgcuuucucguucGUCGUCGGCGUcGCCGCCg -3'
miRNA:   3'- -CGCAGGu-------------CGGCGGCCGCGcCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 151575 0.73 0.183669
Target:  5'- aGCGcCCc-CCGgCGGCGCGcGCCGCCg -3'
miRNA:   3'- -CGCaGGucGGCgGCCGCGC-CGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.