miRNA display CGI


Results 81 - 100 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 144819 0.73 0.187469
Target:  5'- gGCGUCCgugcacgcggacgAGCCGCUGGaGCGGgUGCCg -3'
miRNA:   3'- -CGCAGG-------------UCGGCGGCCgCGCCgGCGGg -5'
10710 5' -66.9 NC_002794.1 + 50810 0.73 0.187895
Target:  5'- gGCGUCgGGCgCuCCGGCGCccCCGCCCu -3'
miRNA:   3'- -CGCAGgUCG-GcGGCCGCGccGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 192429 0.73 0.187895
Target:  5'- cGgGUCC-GCgGCCGGCGCGucGCgCGCCUc -3'
miRNA:   3'- -CgCAGGuCGgCGGCCGCGC--CG-GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 115316 0.73 0.192207
Target:  5'- cCGUCCgcacGGUCGCCgcGGCGUccgGGCCGCUCg -3'
miRNA:   3'- cGCAGG----UCGGCGG--CCGCG---CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 185258 0.73 0.192207
Target:  5'- aGCG-CCAgcggacGCCGCCGGcCGagugGGCCGCCg -3'
miRNA:   3'- -CGCaGGU------CGGCGGCC-GCg---CCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 61805 0.73 0.192643
Target:  5'- cCGUCCccgcucaucuccggcGGCCGCCGGCGgcCGGCgucacuccgcuccgCGCCCc -3'
miRNA:   3'- cGCAGG---------------UCGGCGGCCGC--GCCG--------------GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 103941 0.73 0.193956
Target:  5'- cGCGUggccgccgccgcucgCCAGCCGCCGGCGCuucagacugcgGGCgagcuuCGCCg -3'
miRNA:   3'- -CGCA---------------GGUCGGCGGCCGCG-----------CCG------GCGGg -5'
10710 5' -66.9 NC_002794.1 + 53734 0.73 0.196606
Target:  5'- cGCGccaucgCCGGCCGCCGcUGCcGCCGCCg -3'
miRNA:   3'- -CGCa-----GGUCGGCGGCcGCGcCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 149698 0.73 0.196606
Target:  5'- cGCGgg-GGCCGCCuGGCGggugGGCCGCCUg -3'
miRNA:   3'- -CGCaggUCGGCGG-CCGCg---CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 119496 0.73 0.196606
Target:  5'- uGCGUCCucggGGUCGUCGGCGgcgcggagcCGGCCGCg- -3'
miRNA:   3'- -CGCAGG----UCGGCGGCCGC---------GCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 190738 0.73 0.196606
Target:  5'- aGCG-CCcGCCGCCgucucgacgggGGCgGCGGCCGCgCg -3'
miRNA:   3'- -CGCaGGuCGGCGG-----------CCG-CGCCGGCGgG- -5'
10710 5' -66.9 NC_002794.1 + 49019 0.73 0.196606
Target:  5'- cGCGg-CGGCCGCggcgucgucCGGCGCGGUCGUCa -3'
miRNA:   3'- -CGCagGUCGGCG---------GCCGCGCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 102075 0.73 0.196606
Target:  5'- gGCGaCCuGCCGCgGGCcgacgaGCcGCCGCCCa -3'
miRNA:   3'- -CGCaGGuCGGCGgCCG------CGcCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 192136 0.73 0.196606
Target:  5'- uGCuGUUgCuGCUGCCGGCGCGGUCGCg- -3'
miRNA:   3'- -CG-CAG-GuCGGCGGCCGCGCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 65738 0.73 0.201092
Target:  5'- cCGUCCGGCCuCCGacggccccGCGCcgccGCCGCCCg -3'
miRNA:   3'- cGCAGGUCGGcGGC--------CGCGc---CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 89825 0.73 0.201092
Target:  5'- uGCGUCCuggggaacgAGUCgGUCGGC-CGGCCGUCCc -3'
miRNA:   3'- -CGCAGG---------UCGG-CGGCCGcGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 41242 0.73 0.201092
Target:  5'- aCGcCgCGGCCGCCGaCGcCGGCgGCCCg -3'
miRNA:   3'- cGCaG-GUCGGCGGCcGC-GCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 16296 0.73 0.201092
Target:  5'- -aGUCUAGCCuGgCGGcCGCGGCCGgCUg -3'
miRNA:   3'- cgCAGGUCGG-CgGCC-GCGCCGGCgGG- -5'
10710 5' -66.9 NC_002794.1 + 60059 0.73 0.201092
Target:  5'- --cUUCGGCCGCCGcaccGUGCcGCCGCCCg -3'
miRNA:   3'- cgcAGGUCGGCGGC----CGCGcCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 12223 0.73 0.201092
Target:  5'- gGCGUCgGcGgCGCCGGCG-GcGCCGUCCg -3'
miRNA:   3'- -CGCAGgU-CgGCGGCCGCgC-CGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.