miRNA display CGI


Results 101 - 120 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 113241 0.73 0.201092
Target:  5'- cCGUCCAGgaucucCCGCUGcaGCGCGuCCGCCCg -3'
miRNA:   3'- cGCAGGUC------GGCGGC--CGCGCcGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 65253 0.73 0.205205
Target:  5'- gGCGaUCCGGCCucGCCGaGCgGCGGCgccuccuCGCCCc -3'
miRNA:   3'- -CGC-AGGUCGG--CGGC-CG-CGCCG-------GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 13811 0.73 0.205667
Target:  5'- cGgGcCCGGCCGgCGGCGaCGGCCuCCUc -3'
miRNA:   3'- -CgCaGGUCGGCgGCCGC-GCCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 102632 0.73 0.205667
Target:  5'- gGCGgUCAuCCGCCGGCugGCGGCgCGCUCg -3'
miRNA:   3'- -CGCaGGUcGGCGGCCG--CGCCG-GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 76828 0.73 0.205667
Target:  5'- aCG-CCAGCgGCCGGCGauGCgCGCCg -3'
miRNA:   3'- cGCaGGUCGgCGGCCGCgcCG-GCGGg -5'
10710 5' -66.9 NC_002794.1 + 48627 0.73 0.205667
Target:  5'- cGCGgagCGGCCGUCGGggccCGCGaGCCGCCg -3'
miRNA:   3'- -CGCag-GUCGGCGGCC----GCGC-CGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 51350 0.73 0.205667
Target:  5'- aCGgCCaaAGCCGCCcGagGCGGCCGCCCc -3'
miRNA:   3'- cGCaGG--UCGGCGGcCg-CGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 194480 0.73 0.205667
Target:  5'- aGCGgcuccUCCAGCCGCCccuccGCGCccGGCCcgcgGCCCg -3'
miRNA:   3'- -CGC-----AGGUCGGCGGc----CGCG--CCGG----CGGG- -5'
10710 5' -66.9 NC_002794.1 + 69061 0.73 0.205667
Target:  5'- cGCcaCgGGCCGCC-GC-CGGCCGCCCu -3'
miRNA:   3'- -CGcaGgUCGGCGGcCGcGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 131275 0.73 0.210331
Target:  5'- cCGgcaCCA-CCGCCGGCGCcgucgcuccGCCGCCCg -3'
miRNA:   3'- cGCa--GGUcGGCGGCCGCGc--------CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 71773 0.73 0.210331
Target:  5'- -gGUCCGcGCCGUC-GCGCGGCgaguCGCCCc -3'
miRNA:   3'- cgCAGGU-CGGCGGcCGCGCCG----GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 184147 0.73 0.210331
Target:  5'- gGCGUUCGGauCCGCCGGCGaCGG-CGUCUc -3'
miRNA:   3'- -CGCAGGUC--GGCGGCCGC-GCCgGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 186294 0.73 0.210331
Target:  5'- cGCGgCCAgGCgGCCGGUcgccGCGGCgCGCUCg -3'
miRNA:   3'- -CGCaGGU-CGgCGGCCG----CGCCG-GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 71278 0.72 0.214607
Target:  5'- cGCgGUCCcgauacggaaaauAGCCGCCGGCGCGcucgggcggcgaGCgCGCCa -3'
miRNA:   3'- -CG-CAGG-------------UCGGCGGCCGCGC------------CG-GCGGg -5'
10710 5' -66.9 NC_002794.1 + 17637 0.72 0.215087
Target:  5'- aGCGaUCCcGCCGCC---GCGGCCGCCg -3'
miRNA:   3'- -CGC-AGGuCGGCGGccgCGCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 62809 0.72 0.215087
Target:  5'- --cUCCGGCaCGCCGGCGCcGUacuuuCGCCCg -3'
miRNA:   3'- cgcAGGUCG-GCGGCCGCGcCG-----GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 134154 0.72 0.215087
Target:  5'- -gGUCCGuGuuGCUGGcCGUGGCCGCgCg -3'
miRNA:   3'- cgCAGGU-CggCGGCC-GCGCCGGCGgG- -5'
10710 5' -66.9 NC_002794.1 + 189650 0.72 0.215087
Target:  5'- gGCuGaCUAGCCgGCUGGCcgaGCGGUCGCCCc -3'
miRNA:   3'- -CG-CaGGUCGG-CGGCCG---CGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 37493 0.72 0.215087
Target:  5'- cGCGaCCAGCCGCaCGcGCGUguGGUCGCgCa -3'
miRNA:   3'- -CGCaGGUCGGCG-GC-CGCG--CCGGCGgG- -5'
10710 5' -66.9 NC_002794.1 + 145973 0.72 0.219445
Target:  5'- cGCGcCCAGCgCGCCcagaGCGCccagaacGGCCGCCg -3'
miRNA:   3'- -CGCaGGUCG-GCGGc---CGCG-------CCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.