miRNA display CGI


Results 61 - 80 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 66561 0.66 0.503217
Target:  5'- -aGUaauaCGGUauCGCCGGCGcCGGCggcaGCCCc -3'
miRNA:   3'- cgCAg---GUCG--GCGGCCGC-GCCGg---CGGG- -5'
10710 5' -66.9 NC_002794.1 + 79091 0.66 0.503217
Target:  5'- cGCGcUCCcGcCCGCCcGCGCgaugacGGCCGUCUu -3'
miRNA:   3'- -CGC-AGGuC-GGCGGcCGCG------CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 149212 0.66 0.503217
Target:  5'- --aUCCGGCUgGCCggaagcgaGGCGCcGCCGCCg -3'
miRNA:   3'- cgcAGGUCGG-CGG--------CCGCGcCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 145812 0.66 0.503217
Target:  5'- aCG-CC-GCCGCCGGCGgCGaGCCGagCg -3'
miRNA:   3'- cGCaGGuCGGCGGCCGC-GC-CGGCggG- -5'
10710 5' -66.9 NC_002794.1 + 113540 0.66 0.503217
Target:  5'- gGCGUcgCCGGCCcggaGCaGGCGcCGGaCCGUCUg -3'
miRNA:   3'- -CGCA--GGUCGG----CGgCCGC-GCC-GGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 82203 0.66 0.503217
Target:  5'- aGCGcCCGGCacuccuucugCGCuCGaGCcCGGCCGaCCCg -3'
miRNA:   3'- -CGCaGGUCG----------GCG-GC-CGcGCCGGC-GGG- -5'
10710 5' -66.9 NC_002794.1 + 99451 0.66 0.503217
Target:  5'- --aUCC-GCCGCCGGgGguauCGGCgGCUCa -3'
miRNA:   3'- cgcAGGuCGGCGGCCgC----GCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 194192 0.66 0.503217
Target:  5'- aCGUUCAccGCCGCgugguacgacacCGGCG-GGCCGUUCa -3'
miRNA:   3'- cGCAGGU--CGGCG------------GCCGCgCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 94268 0.66 0.502339
Target:  5'- cGCGUCau-UUGCgCGGCGCGGCCcgagcggggggcgGCUCg -3'
miRNA:   3'- -CGCAGgucGGCG-GCCGCGCCGG-------------CGGG- -5'
10710 5' -66.9 NC_002794.1 + 116334 0.66 0.502339
Target:  5'- uCGUCCAGCUGUucgcacucguacaCGGCcgcGCGGuCCGaCCg -3'
miRNA:   3'- cGCAGGUCGGCG-------------GCCG---CGCC-GGCgGG- -5'
10710 5' -66.9 NC_002794.1 + 193350 0.66 0.494473
Target:  5'- uGCGagcaacaCAGCaGCCGGUGCcacgGGCCGCgCu -3'
miRNA:   3'- -CGCag-----GUCGgCGGCCGCG----CCGGCGgG- -5'
10710 5' -66.9 NC_002794.1 + 113160 0.66 0.494473
Target:  5'- aGCGUgUAGCgCGCgcgggCGGCgGCGGUCGCg- -3'
miRNA:   3'- -CGCAgGUCG-GCG-----GCCG-CGCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 103088 0.66 0.494473
Target:  5'- aGCGUCgCGGCC-CgCGcGCGCGGUCacgacuCCCa -3'
miRNA:   3'- -CGCAG-GUCGGcG-GC-CGCGCCGGc-----GGG- -5'
10710 5' -66.9 NC_002794.1 + 59297 0.66 0.494473
Target:  5'- cGC-UCgAcGCCGCgcagcgccaCGGCGCGcccgacuucGCCGCCCg -3'
miRNA:   3'- -CGcAGgU-CGGCG---------GCCGCGC---------CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 117369 0.66 0.494473
Target:  5'- aGCGgCgGGCCGCCuGCaCGGUCGCg- -3'
miRNA:   3'- -CGCaGgUCGGCGGcCGcGCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 126352 0.66 0.494473
Target:  5'- cGUGUcCCGGCuccgauuuCGCCGcuGCGUGGgCGCCg -3'
miRNA:   3'- -CGCA-GGUCG--------GCGGC--CGCGCCgGCGGg -5'
10710 5' -66.9 NC_002794.1 + 129920 0.66 0.494473
Target:  5'- cGCGauucgCCAgGCCGUggcgacggCGGCgGCGGCgGCUCu -3'
miRNA:   3'- -CGCa----GGU-CGGCG--------GCCG-CGCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 180263 0.66 0.494473
Target:  5'- uUGUCCGcuUCGCCGGUcuccucGCGGCcCGCgCCg -3'
miRNA:   3'- cGCAGGUc-GGCGGCCG------CGCCG-GCG-GG- -5'
10710 5' -66.9 NC_002794.1 + 128659 0.66 0.494473
Target:  5'- uGUGggaCCGGCCGCgcgaauaauCGcCGCGGCgGUCCg -3'
miRNA:   3'- -CGCa--GGUCGGCG---------GCcGCGCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 185778 0.66 0.494473
Target:  5'- nCGUCaCAcGUCgGCCGGCGCGGggacccacaUCGCCg -3'
miRNA:   3'- cGCAG-GU-CGG-CGGCCGCGCC---------GGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.