miRNA display CGI


Results 81 - 100 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 179469 0.66 0.493602
Target:  5'- aUGUUCAGCgcgcacuCGaCCGGuUGuCGGCCGUCCg -3'
miRNA:   3'- cGCAGGUCG-------GC-GGCC-GC-GCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 70855 0.66 0.493602
Target:  5'- aCGUgCCGGCCuccuCCGGCggcggcaGCGGCgGCUCc -3'
miRNA:   3'- cGCA-GGUCGGc---GGCCG-------CGCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 114128 0.66 0.491862
Target:  5'- uCGUUCuuGCCGCCGGCcagggcGCGcaggcgccgcgucaGCCGCuCCa -3'
miRNA:   3'- cGCAGGu-CGGCGGCCG------CGC--------------CGGCG-GG- -5'
10710 5' -66.9 NC_002794.1 + 62064 0.66 0.489259
Target:  5'- aCG-CCGGCggcgaCGCCGGCggcgacgacggcgacGCGGCgCGCCg -3'
miRNA:   3'- cGCaGGUCG-----GCGGCCG---------------CGCCG-GCGGg -5'
10710 5' -66.9 NC_002794.1 + 53998 0.66 0.485798
Target:  5'- aGCGUCuccagCAGCUcCCGcaGCaCGGCCGCCUu -3'
miRNA:   3'- -CGCAG-----GUCGGcGGC--CGcGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 50580 0.66 0.485798
Target:  5'- gGCGUgCgCGGCgGCUGG-GUGGCCgGCgCCg -3'
miRNA:   3'- -CGCA-G-GUCGgCGGCCgCGCCGG-CG-GG- -5'
10710 5' -66.9 NC_002794.1 + 16809 0.66 0.485798
Target:  5'- aCGcCCAGCCGCCccCGCcGCCGCa- -3'
miRNA:   3'- cGCaGGUCGGCGGccGCGcCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 102474 0.66 0.485798
Target:  5'- cGCGU-CGGCgUGCCGGC-CGGCuuccaCGUCCu -3'
miRNA:   3'- -CGCAgGUCG-GCGGCCGcGCCG-----GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 180666 0.66 0.485798
Target:  5'- gGCGUgCCGGggaacUCGCCGGCcgcuccCGGC-GCCCg -3'
miRNA:   3'- -CGCA-GGUC-----GGCGGCCGc-----GCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 67015 0.66 0.485798
Target:  5'- -aGUCCGGCgGCggCGGC-CGGCU-CCCg -3'
miRNA:   3'- cgCAGGUCGgCG--GCCGcGCCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 37569 0.66 0.485798
Target:  5'- cGCGUCUccgAGCCGUcgaacagauagCGGuCGCGauggaGCCGCaCCg -3'
miRNA:   3'- -CGCAGG---UCGGCG-----------GCC-GCGC-----CGGCG-GG- -5'
10710 5' -66.9 NC_002794.1 + 53287 0.66 0.485798
Target:  5'- aGCGaccacUCCAGgUGCCGaGCGguCGGCCgGCgCCg -3'
miRNA:   3'- -CGC-----AGGUCgGCGGC-CGC--GCCGG-CG-GG- -5'
10710 5' -66.9 NC_002794.1 + 112726 0.66 0.485798
Target:  5'- cCGUCCAGgaCGCggaaGGCGCGG-UGCuCCg -3'
miRNA:   3'- cGCAGGUCg-GCGg---CCGCGCCgGCG-GG- -5'
10710 5' -66.9 NC_002794.1 + 42651 0.66 0.485798
Target:  5'- cGCGgCCGaagccgacggcGCCGCCGGCaCGGgguaCGCCg -3'
miRNA:   3'- -CGCaGGU-----------CGGCGGCCGcGCCg---GCGGg -5'
10710 5' -66.9 NC_002794.1 + 66729 0.66 0.485798
Target:  5'- nCG-CCA-CCGCCGGCggugGCGGCgGCgCg -3'
miRNA:   3'- cGCaGGUcGGCGGCCG----CGCCGgCGgG- -5'
10710 5' -66.9 NC_002794.1 + 71802 0.66 0.485798
Target:  5'- ---cCCGGCgGgCgCGGCGaGGCCGCCUc -3'
miRNA:   3'- cgcaGGUCGgC-G-GCCGCgCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 80042 0.66 0.485798
Target:  5'- cGCcgaCAG-UGCCGGCGCGaGCCGCg- -3'
miRNA:   3'- -CGcagGUCgGCGGCCGCGC-CGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 55630 0.66 0.485798
Target:  5'- cGCuggCCAGCaCGCgGGC-CGGCaggcgcaGCCCc -3'
miRNA:   3'- -CGca-GGUCG-GCGgCCGcGCCGg------CGGG- -5'
10710 5' -66.9 NC_002794.1 + 179248 0.66 0.484934
Target:  5'- gGCGUCgGcgagaccGCCGCCGaGaCGCucaGGCUGaCCCa -3'
miRNA:   3'- -CGCAGgU-------CGGCGGC-C-GCG---CCGGC-GGG- -5'
10710 5' -66.9 NC_002794.1 + 21948 0.66 0.484934
Target:  5'- uCGUCgaaGGCCGUCGGCcgcucccGCGG-CGCCg -3'
miRNA:   3'- cGCAGg--UCGGCGGCCG-------CGCCgGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.