miRNA display CGI


Results 41 - 60 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 21875 0.7 0.310691
Target:  5'- cGCGaggCCGGCCGCgGGgugucCGCGGCCuGCg- -3'
miRNA:   3'- -CGCa--GGUCGGCGgCC-----GCGCCGG-CGgg -5'
10710 5' -66.9 NC_002794.1 + 21948 0.66 0.484934
Target:  5'- uCGUCgaaGGCCGUCGGCcgcucccGCGG-CGCCg -3'
miRNA:   3'- cGCAGg--UCGGCGGCCG-------CGCCgGCGGg -5'
10710 5' -66.9 NC_002794.1 + 21989 0.66 0.520902
Target:  5'- cGCGaCCcGUCGCCGGCaa-GCCGgCCa -3'
miRNA:   3'- -CGCaGGuCGGCGGCCGcgcCGGCgGG- -5'
10710 5' -66.9 NC_002794.1 + 22553 0.71 0.2856
Target:  5'- cCGUCCGccaccGCCGacaCGGCaCGGCCGCUg -3'
miRNA:   3'- cGCAGGU-----CGGCg--GCCGcGCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 22868 0.72 0.224874
Target:  5'- aCGUcCCGGCCGUCGcGCGCuucccuGGCCuCCCg -3'
miRNA:   3'- cGCA-GGUCGGCGGC-CGCG------CCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 23456 0.66 0.512028
Target:  5'- aCGUCCGGaucgaCGUCGGgGCGGagggguCUGCCa -3'
miRNA:   3'- cGCAGGUCg----GCGGCCgCGCC------GGCGGg -5'
10710 5' -66.9 NC_002794.1 + 23711 0.68 0.427275
Target:  5'- aGCGUCCcGaa-CCGcGCGCGGCgGgCCCg -3'
miRNA:   3'- -CGCAGGuCggcGGC-CGCGCCGgC-GGG- -5'
10710 5' -66.9 NC_002794.1 + 24001 0.7 0.291719
Target:  5'- cCGUCCgacgGGCCGCCGucacCGCGG-CGCCUc -3'
miRNA:   3'- cGCAGG----UCGGCGGCc---GCGCCgGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 24190 0.67 0.451859
Target:  5'- cGCGg-CA-CCGagaCCGaGCGCGGCgGCCCg -3'
miRNA:   3'- -CGCagGUcGGC---GGC-CGCGCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 26308 0.68 0.403501
Target:  5'- -gGUCaCGGCCGgaCGaugaCGCGGaCCGCCCa -3'
miRNA:   3'- cgCAG-GUCGGCg-GCc---GCGCC-GGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 26654 0.71 0.251002
Target:  5'- gGCGgCCGGCuCGUCGGCGgGGUggagCGCCa -3'
miRNA:   3'- -CGCaGGUCG-GCGGCCGCgCCG----GCGGg -5'
10710 5' -66.9 NC_002794.1 + 28661 0.67 0.467823
Target:  5'- cGCGggccCCGgaaccGCCGCCGGUggccgucGCcGCCGCCg -3'
miRNA:   3'- -CGCa---GGU-----CGGCGGCCG-------CGcCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 29207 0.81 0.058585
Target:  5'- cCGUCCGGCgGUCGGCGgccguCGGCCGCCg -3'
miRNA:   3'- cGCAGGUCGgCGGCCGC-----GCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 29754 0.71 0.279582
Target:  5'- gGCGcCgAGCCcgcGCCGaGCGUcucGGCCGCUCg -3'
miRNA:   3'- -CGCaGgUCGG---CGGC-CGCG---CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 30069 0.75 0.142477
Target:  5'- gGgGUCCGGUCGCCcggucgacgagGcGCGCGGCCGguCCCg -3'
miRNA:   3'- -CgCAGGUCGGCGG-----------C-CGCGCCGGC--GGG- -5'
10710 5' -66.9 NC_002794.1 + 30507 0.69 0.365793
Target:  5'- cGCGUCCuucAGCa-CCaaGCGCGGCaGCCCg -3'
miRNA:   3'- -CGCAGG---UCGgcGGc-CGCGCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 32247 0.74 0.167593
Target:  5'- -gGUCCugcAGCUGCUGGCGCucgacGGCCGgCCg -3'
miRNA:   3'- cgCAGG---UCGGCGGCCGCG-----CCGGCgGG- -5'
10710 5' -66.9 NC_002794.1 + 32288 0.75 0.156376
Target:  5'- aGCGacgCC-GCCGCCGccGCgGCGGCCGCgCCg -3'
miRNA:   3'- -CGCa--GGuCGGCGGC--CG-CGCCGGCG-GG- -5'
10710 5' -66.9 NC_002794.1 + 32860 0.67 0.460224
Target:  5'- aGCGgccgagCCGGCgGgCGGCgGCGGCgGCg- -3'
miRNA:   3'- -CGCa-----GGUCGgCgGCCG-CGCCGgCGgg -5'
10710 5' -66.9 NC_002794.1 + 33455 0.7 0.291719
Target:  5'- uCGggCGGCCGCCGGaCGCGcccacGCCGCUg -3'
miRNA:   3'- cGCagGUCGGCGGCC-GCGC-----CGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.