miRNA display CGI


Results 61 - 80 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 34020 0.69 0.337424
Target:  5'- cCGUCCaucaucgaccagAGCCGCCuGCuGCcgGGCCgGCCCg -3'
miRNA:   3'- cGCAGG------------UCGGCGGcCG-CG--CCGG-CGGG- -5'
10710 5' -66.9 NC_002794.1 + 34085 0.68 0.411332
Target:  5'- gGCGgccgggCAGCCGUCGG-GCGGCCcggaccgcgacGUCCg -3'
miRNA:   3'- -CGCag----GUCGGCGGCCgCGCCGG-----------CGGG- -5'
10710 5' -66.9 NC_002794.1 + 34322 0.67 0.451859
Target:  5'- cCGggaGGCCGUCcgcaaGGCGaCGGCCGCgCCg -3'
miRNA:   3'- cGCaggUCGGCGG-----CCGC-GCCGGCG-GG- -5'
10710 5' -66.9 NC_002794.1 + 34732 0.75 0.137241
Target:  5'- cGCGggCGGCCGCagagcgcgcgaCGGCGCggugggacgcggcacGGCCGCCCg -3'
miRNA:   3'- -CGCagGUCGGCG-----------GCCGCG---------------CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 34784 0.69 0.330587
Target:  5'- cGCG-CCAGCCGagucggccgaaCCGGCcCGGgCCGCgCg -3'
miRNA:   3'- -CGCaGGUCGGC-----------GGCCGcGCC-GGCGgG- -5'
10710 5' -66.9 NC_002794.1 + 34851 0.66 0.511144
Target:  5'- gGCGUCgGagcgggcGCCGCgGGCGCcgcGGaCGCCg -3'
miRNA:   3'- -CGCAGgU-------CGGCGgCCGCG---CCgGCGGg -5'
10710 5' -66.9 NC_002794.1 + 34992 0.68 0.422454
Target:  5'- uGCG-CCGGCUGCgGGCcCGGCacuauguacagcaacCGCCUc -3'
miRNA:   3'- -CGCaGGUCGGCGgCCGcGCCG---------------GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 35054 0.71 0.256519
Target:  5'- -gGUCCAccauGaCCGCCGcuGCGUGGgCGCCCu -3'
miRNA:   3'- cgCAGGU----C-GGCGGC--CGCGCCgGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 35544 0.67 0.468671
Target:  5'- cGCGagacCCGGCgcucgCGCgCGcGCGUGGUgGCCCa -3'
miRNA:   3'- -CGCa---GGUCG-----GCG-GC-CGCGCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 35729 0.72 0.240262
Target:  5'- gGCcUCCGGCgGCCGcGCGUcucacuGGCUGUCCa -3'
miRNA:   3'- -CGcAGGUCGgCGGC-CGCG------CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 35771 0.66 0.520012
Target:  5'- cGCGgcaCC-GUCGCCGGCGUcgucuccGGCgugacccugCGCCCc -3'
miRNA:   3'- -CGCa--GGuCGGCGGCCGCG-------CCG---------GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 36020 0.8 0.061525
Target:  5'- gGCGgaaUCC-GCCGuCCGGCcCGGCCGCCCg -3'
miRNA:   3'- -CGC---AGGuCGGC-GGCCGcGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 36156 0.66 0.536122
Target:  5'- --cUCC-GCCGCCGccucccccccacccGCGCcccgGGCCGCCa -3'
miRNA:   3'- cgcAGGuCGGCGGC--------------CGCG----CCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 36279 0.66 0.538825
Target:  5'- cGCGUCCcGCgacUGCgGGUGCacgaGCuCGCCCc -3'
miRNA:   3'- -CGCAGGuCG---GCGgCCGCGc---CG-GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 36560 0.67 0.451859
Target:  5'- cCGUCCGcugcagacacgcGCCGCCGaGCagGCGGuCCGCgugCCa -3'
miRNA:   3'- cGCAGGU------------CGGCGGC-CG--CGCC-GGCG---GG- -5'
10710 5' -66.9 NC_002794.1 + 36901 0.69 0.330587
Target:  5'- aGCGUCCagaGGUCG-CGGCGcCGGCC-CCg -3'
miRNA:   3'- -CGCAGG---UCGGCgGCCGC-GCCGGcGGg -5'
10710 5' -66.9 NC_002794.1 + 37493 0.72 0.215087
Target:  5'- cGCGaCCAGCCGCaCGcGCGUguGGUCGCgCa -3'
miRNA:   3'- -CGCaGGUCGGCG-GC-CGCG--CCGGCGgG- -5'
10710 5' -66.9 NC_002794.1 + 37541 0.69 0.365793
Target:  5'- gGCGaaCAGCCGCCGGaGgGGCCacgaCCg -3'
miRNA:   3'- -CGCagGUCGGCGGCCgCgCCGGcg--GG- -5'
10710 5' -66.9 NC_002794.1 + 37569 0.66 0.485798
Target:  5'- cGCGUCUccgAGCCGUcgaacagauagCGGuCGCGauggaGCCGCaCCg -3'
miRNA:   3'- -CGCAGG---UCGGCG-----------GCC-GCGC-----CGGCG-GG- -5'
10710 5' -66.9 NC_002794.1 + 37740 0.74 0.175467
Target:  5'- gGCGccgCCGGCgG-CGGCGCGGCgGCgCCg -3'
miRNA:   3'- -CGCa--GGUCGgCgGCCGCGCCGgCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.