miRNA display CGI


Results 81 - 100 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 37783 0.67 0.443577
Target:  5'- uCGUCguCGGCCGCaGGCGCcucgacgagacGGUCGCUCc -3'
miRNA:   3'- cGCAG--GUCGGCGgCCGCG-----------CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 37875 0.67 0.460224
Target:  5'- gGCGUCUcgGGCgGCgGGgGCGGUgGCg- -3'
miRNA:   3'- -CGCAGG--UCGgCGgCCgCGCCGgCGgg -5'
10710 5' -66.9 NC_002794.1 + 37908 0.75 0.139183
Target:  5'- aGCGgcucgCCGGCCucaacgucaaCCGcCGCGGCCGCCCg -3'
miRNA:   3'- -CGCa----GGUCGGc---------GGCcGCGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 38252 0.68 0.403501
Target:  5'- aGCGgggCCucCUGCgugaGGCGCGGCC-CCCg -3'
miRNA:   3'- -CGCa--GGucGGCGg---CCGCGCCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 38437 0.77 0.107312
Target:  5'- gGCGgCgGGCCggacugaggaGCCGGCGCGGCCGCg- -3'
miRNA:   3'- -CGCaGgUCGG----------CGGCCGCGCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 38498 0.68 0.380582
Target:  5'- cGCGg-CGG-CGCCGGuCGCcGCCGCCUc -3'
miRNA:   3'- -CGCagGUCgGCGGCC-GCGcCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 38525 0.71 0.26785
Target:  5'- cGCGaUCCcaGGUCGCCGcCGCcGCCGCCUc -3'
miRNA:   3'- -CGC-AGG--UCGGCGGCcGCGcCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 38557 0.74 0.160037
Target:  5'- cCG-CCAGaagcCCGCCGGCGCcucgacggagucGGCCGCCUc -3'
miRNA:   3'- cGCaGGUC----GGCGGCCGCG------------CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 38623 0.71 0.279582
Target:  5'- cGCGUCCcGaCuCGCCGGUGCGGCgcgacggagGCUCg -3'
miRNA:   3'- -CGCAGGuC-G-GCGGCCGCGCCGg--------CGGG- -5'
10710 5' -66.9 NC_002794.1 + 38699 0.71 0.2856
Target:  5'- cCG-CCGcGCCGUCGaGCGCcccGGCCGCCg -3'
miRNA:   3'- cGCaGGU-CGGCGGC-CGCG---CCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 39667 0.69 0.343665
Target:  5'- uCGcCCucuGCCGCgCGGUGCGcuucuucGUCGCCCg -3'
miRNA:   3'- cGCaGGu--CGGCG-GCCGCGC-------CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 40466 0.68 0.427275
Target:  5'- cGCuGUCCcuucgggcGGCUcaucgaacgGCCGGCGCucGCCGCUCg -3'
miRNA:   3'- -CG-CAGG--------UCGG---------CGGCCGCGc-CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 41242 0.73 0.201092
Target:  5'- aCGcCgCGGCCGCCGaCGcCGGCgGCCCg -3'
miRNA:   3'- cGCaG-GUCGGCGGCcGC-GCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 41663 0.7 0.291719
Target:  5'- cGUGUCCuuaucgGGCCGCCGcaggaGCGCccGGaCCGCCg -3'
miRNA:   3'- -CGCAGG------UCGGCGGC-----CGCG--CC-GGCGGg -5'
10710 5' -66.9 NC_002794.1 + 42651 0.66 0.485798
Target:  5'- cGCGgCCGaagccgacggcGCCGCCGGCaCGGgguaCGCCg -3'
miRNA:   3'- -CGCaGGU-----------CGGCGGCCGcGCCg---GCGGg -5'
10710 5' -66.9 NC_002794.1 + 42851 0.67 0.477196
Target:  5'- aGCGcCCGGCC-UCGGCGUacgcuuucuGGaaGCCCc -3'
miRNA:   3'- -CGCaGGUCGGcGGCCGCG---------CCggCGGG- -5'
10710 5' -66.9 NC_002794.1 + 43902 0.68 0.427275
Target:  5'- gGCGUCUcgugAGgaG-CGGCGCGGUCaGCCCc -3'
miRNA:   3'- -CGCAGG----UCggCgGCCGCGCCGG-CGGG- -5'
10710 5' -66.9 NC_002794.1 + 43998 0.66 0.503217
Target:  5'- aCGUgUGGgaGCaCGGCGCGGCCggcGUCCg -3'
miRNA:   3'- cGCAgGUCggCG-GCCGCGCCGG---CGGG- -5'
10710 5' -66.9 NC_002794.1 + 44213 0.67 0.443577
Target:  5'- aCGUCCGGCUcgggcgccgaggGCuCGGUGCcgGGCgGCUCg -3'
miRNA:   3'- cGCAGGUCGG------------CG-GCCGCG--CCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 44261 0.71 0.279582
Target:  5'- gGCGgCuCGGCCGCCGGgGaCGGaggaguccgCGCCCg -3'
miRNA:   3'- -CGCaG-GUCGGCGGCCgC-GCCg--------GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.