miRNA display CGI


Results 41 - 60 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 187940 0.66 0.529836
Target:  5'- cGCGUCacgcguGCgCGCgCGaGCGCgggaccucgggaGGCCGCUCa -3'
miRNA:   3'- -CGCAGgu----CG-GCG-GC-CGCG------------CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 187858 0.72 0.245584
Target:  5'- cUGcCCAGCCGC--GCGCGGCuCGCCg -3'
miRNA:   3'- cGCaGGUCGGCGgcCGCGCCG-GCGGg -5'
10710 5' -66.9 NC_002794.1 + 187756 0.78 0.092947
Target:  5'- --cUCCGaacGCCGCCGGCGcCGGUCGCCUc -3'
miRNA:   3'- cgcAGGU---CGGCGGCCGC-GCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 187573 0.86 0.024025
Target:  5'- cCGUaCCcGCCGUCGGCGCGGCCGCCg -3'
miRNA:   3'- cGCA-GGuCGGCGGCCGCGCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 187450 0.67 0.443577
Target:  5'- cCGUCUgccGCCGCuCGGCGUcgcucGGCgCGCgCCg -3'
miRNA:   3'- cGCAGGu--CGGCG-GCCGCG-----CCG-GCG-GG- -5'
10710 5' -66.9 NC_002794.1 + 186930 0.69 0.373137
Target:  5'- uGCGccgCCAccGCCGCCacggcccccgGGcCGCuGGCCGCCg -3'
miRNA:   3'- -CGCa--GGU--CGGCGG----------CC-GCG-CCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 186839 0.68 0.419258
Target:  5'- gGCGcCCgacAGCgCGCgGGCGCuGCCGUgCa -3'
miRNA:   3'- -CGCaGG---UCG-GCGgCCGCGcCGGCGgG- -5'
10710 5' -66.9 NC_002794.1 + 186385 0.72 0.245584
Target:  5'- uCGUCgccgCAGCCGCagcCGCGGCCGCaCCa -3'
miRNA:   3'- cGCAG----GUCGGCGgccGCGCCGGCG-GG- -5'
10710 5' -66.9 NC_002794.1 + 186294 0.73 0.210331
Target:  5'- cGCGgCCAgGCgGCCGGUcgccGCGGCgCGCUCg -3'
miRNA:   3'- -CGCaGGU-CGgCGGCCG----CGCCG-GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 186263 0.67 0.460224
Target:  5'- uCGaCCGGaucaCCGCCuGGCGCGGCgGCa- -3'
miRNA:   3'- cGCaGGUC----GGCGG-CCGCGCCGgCGgg -5'
10710 5' -66.9 NC_002794.1 + 185924 0.71 0.27191
Target:  5'- uCG-CCA-CCGCCGGCcacccgccaggcucGCGGCCGCgCCc -3'
miRNA:   3'- cGCaGGUcGGCGGCCG--------------CGCCGGCG-GG- -5'
10710 5' -66.9 NC_002794.1 + 185778 0.66 0.494473
Target:  5'- nCGUCaCAcGUCgGCCGGCGCGGggacccacaUCGCCg -3'
miRNA:   3'- cGCAG-GU-CGG-CGGCCGCGCC---------GGCGGg -5'
10710 5' -66.9 NC_002794.1 + 185753 1.12 0.000293
Target:  5'- cGCGUCCAGCCGCCGGCGCGGCCGCCCg -3'
miRNA:   3'- -CGCAGGUCGGCGGCCGCGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 185460 0.7 0.31722
Target:  5'- cGCGaCaaacGCCGCgGGCgGCGGCCGCg- -3'
miRNA:   3'- -CGCaGgu--CGGCGgCCG-CGCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 185338 0.68 0.427275
Target:  5'- cGCGUCgA-CCGCUcGCGC-GCCGCCg -3'
miRNA:   3'- -CGCAGgUcGGCGGcCGCGcCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 185258 0.73 0.192207
Target:  5'- aGCG-CCAgcggacGCCGCCGGcCGagugGGCCGCCg -3'
miRNA:   3'- -CGCaGGU------CGGCGGCC-GCg---CCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 185163 0.81 0.051818
Target:  5'- cGCGUCCu-CCGCCGGCGCGGCgCGgUCg -3'
miRNA:   3'- -CGCAGGucGGCGGCCGCGCCG-GCgGG- -5'
10710 5' -66.9 NC_002794.1 + 184975 0.68 0.395764
Target:  5'- nCGUCgGGCagcacgcagCGCgCGaaGCgGCGGCCGCCCa -3'
miRNA:   3'- cGCAGgUCG---------GCG-GC--CG-CGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 184939 0.7 0.323852
Target:  5'- uCGUCCuGCCgcagcugcGCCGGCccGCGcaGCCGCUCg -3'
miRNA:   3'- cGCAGGuCGG--------CGGCCG--CGC--CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 184830 0.66 0.527149
Target:  5'- cGCGUCCGGgcgcaCCgcgcagcgauacguGCCGGa-CGGCCGUUCg -3'
miRNA:   3'- -CGCAGGUC-----GG--------------CGGCCgcGCCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.