miRNA display CGI


Results 61 - 80 of 539 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 184685 0.69 0.358548
Target:  5'- -aGUaCCAGgaCGCCGGCGgagGGUCGUCCg -3'
miRNA:   3'- cgCA-GGUCg-GCGGCCGCg--CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 184582 0.7 0.304264
Target:  5'- gGCGg-CGGCgGCCacGCGCGGCCGCg- -3'
miRNA:   3'- -CGCagGUCGgCGGc-CGCGCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 184507 0.72 0.229909
Target:  5'- gGCGgcgCgGGCCccgcGCgCGGCGCGggcgacGCCGCCCa -3'
miRNA:   3'- -CGCa--GgUCGG----CG-GCCGCGC------CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 184452 0.7 0.310691
Target:  5'- cGCG-CCGcuGCCGCCcGCG-GGCCGCgCg -3'
miRNA:   3'- -CGCaGGU--CGGCGGcCGCgCCGGCGgG- -5'
10710 5' -66.9 NC_002794.1 + 184147 0.73 0.210331
Target:  5'- gGCGUUCGGauCCGCCGGCGaCGG-CGUCUc -3'
miRNA:   3'- -CGCAGGUC--GGCGGCCGC-GCCgGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 184046 0.7 0.31722
Target:  5'- aGCG-CgCGGUCGCgGGcCGCGGCgaagcggcacgCGCCCa -3'
miRNA:   3'- -CGCaG-GUCGGCGgCC-GCGCCG-----------GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 183858 0.71 0.273666
Target:  5'- cCGUCgCGGCCGUCGGgGCcaCCGCCg -3'
miRNA:   3'- cGCAG-GUCGGCGGCCgCGccGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 183685 0.69 0.358548
Target:  5'- cGgGUCgAGCgccCGCCGcGCGCGGCgGCa- -3'
miRNA:   3'- -CgCAGgUCG---GCGGC-CGCGCCGgCGgg -5'
10710 5' -66.9 NC_002794.1 + 183447 0.74 0.167593
Target:  5'- gGCGcccgCCA-CCGCCGGCGC--CCGCCCg -3'
miRNA:   3'- -CGCa---GGUcGGCGGCCGCGccGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 183228 0.68 0.380582
Target:  5'- aGCGaCCAGgCGacCCGacaCGCGGCgGCCCg -3'
miRNA:   3'- -CGCaGGUCgGC--GGCc--GCGCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 183196 0.72 0.240262
Target:  5'- cGCGccgCCAcGCCGgCGGCGCGuucGUCGCCa -3'
miRNA:   3'- -CGCa--GGU-CGGCgGCCGCGC---CGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 182979 0.69 0.351405
Target:  5'- uCGUUCgAGCCgacgGCCGGCgcuucgccGCGGgCGCCCc -3'
miRNA:   3'- cGCAGG-UCGG----CGGCCG--------CGCCgGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 182941 0.66 0.512028
Target:  5'- -aGUCCGG-CGCCgGGCucgagccgacgGCGGCCgGCUCc -3'
miRNA:   3'- cgCAGGUCgGCGG-CCG-----------CGCCGG-CGGG- -5'
10710 5' -66.9 NC_002794.1 + 182820 0.68 0.406622
Target:  5'- uCGUCCAGCCG-CGGcaccgacacgaccacCaGCGuGCCGCUCg -3'
miRNA:   3'- cGCAGGUCGGCgGCC---------------G-CGC-CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 182257 0.66 0.538825
Target:  5'- aGCGa-CAGCgCGCCGaGUcccgaGCGGCCuCCCa -3'
miRNA:   3'- -CGCagGUCG-GCGGC-CG-----CGCCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 182026 0.75 0.145502
Target:  5'- gGCGUCCgGGCCGCCGGCGaccagaccaGGUccugcgcguagggCGCCUg -3'
miRNA:   3'- -CGCAGG-UCGGCGGCCGCg--------CCG-------------GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 181748 0.7 0.297314
Target:  5'- aGCGgCCGGCCaGCCcgcugacgccgauGGCGcCGcGCCGCCg -3'
miRNA:   3'- -CGCaGGUCGG-CGG-------------CCGC-GC-CGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 181524 0.75 0.152436
Target:  5'- uCGUCCGuucgcccGCCGCCGGCGggccggcgcucuCGGUCGCCg -3'
miRNA:   3'- cGCAGGU-------CGGCGGCCGC------------GCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 181426 0.83 0.037592
Target:  5'- aUGUCCgcgaAGCCGUCGGCGaggGGCCGCCCg -3'
miRNA:   3'- cGCAGG----UCGGCGGCCGCg--CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 181382 0.7 0.304264
Target:  5'- cGgGcCCGGCCGUCaguucgcccgGGC-CGGCCGCCg -3'
miRNA:   3'- -CgCaGGUCGGCGG----------CCGcGCCGGCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.