miRNA display CGI


Results 81 - 100 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 180948 0.69 0.373137
Target:  5'- cGCGUCC-GCgGCCGaCGCGGacuCCGUCg -3'
miRNA:   3'- -CGCAGGuCGgCGGCcGCGCC---GGCGGg -5'
10710 5' -66.9 NC_002794.1 + 180876 0.68 0.403501
Target:  5'- gGCGgaUCCGGCgCGcCCGGUcuCGGCCGCg- -3'
miRNA:   3'- -CGC--AGGUCG-GC-GGCCGc-GCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 180666 0.66 0.485798
Target:  5'- gGCGUgCCGGggaacUCGCCGGCcgcuccCGGC-GCCCg -3'
miRNA:   3'- -CGCA-GGUC-----GGCGGCCGc-----GCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 180599 0.7 0.291719
Target:  5'- aGCuGUCCucgcGCCGCgGGCcacgacaCGGCgGCCCa -3'
miRNA:   3'- -CG-CAGGu---CGGCGgCCGc------GCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 180263 0.66 0.494473
Target:  5'- uUGUCCGcuUCGCCGGUcuccucGCGGCcCGCgCCg -3'
miRNA:   3'- cGCAGGUc-GGCGGCCG------CGCCG-GCG-GG- -5'
10710 5' -66.9 NC_002794.1 + 180005 0.75 0.156376
Target:  5'- gGCGggcCCGGCCacgacgaCGGcCGCGGCCGUCCg -3'
miRNA:   3'- -CGCa--GGUCGGcg-----GCC-GCGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 179469 0.66 0.493602
Target:  5'- aUGUUCAGCgcgcacuCGaCCGGuUGuCGGCCGUCCg -3'
miRNA:   3'- cGCAGGUCG-------GC-GGCC-GC-GCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 179248 0.66 0.484934
Target:  5'- gGCGUCgGcgagaccGCCGCCGaGaCGCucaGGCUGaCCCa -3'
miRNA:   3'- -CGCAGgU-------CGGCGGC-C-GCG---CCGGC-GGG- -5'
10710 5' -66.9 NC_002794.1 + 179104 0.69 0.330587
Target:  5'- cCGUCCGGUCGuCCGcgguccgggcGCGCGGUCGgUCg -3'
miRNA:   3'- cGCAGGUCGGC-GGC----------CGCGCCGGCgGG- -5'
10710 5' -66.9 NC_002794.1 + 156385 0.71 0.273666
Target:  5'- gGgGUCUucuucuagAGCgGCCGGCgccGCGGCCGCggCCa -3'
miRNA:   3'- -CgCAGG--------UCGgCGGCCG---CGCCGGCG--GG- -5'
10710 5' -66.9 NC_002794.1 + 156190 0.66 0.529836
Target:  5'- cGCGUCaucggAGUCGCCGGuCGgagGGCCGgCg -3'
miRNA:   3'- -CGCAGg----UCGGCGGCC-GCg--CCGGCgGg -5'
10710 5' -66.9 NC_002794.1 + 154365 0.75 0.149279
Target:  5'- cGCgGUCCAgGCCGCggcggCGGCG-GGCaCGCCCg -3'
miRNA:   3'- -CG-CAGGU-CGGCG-----GCCGCgCCG-GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 154325 0.66 0.512028
Target:  5'- aGCGgcgUCGGUCGucCCGGgugcCGCGGCCGagcuCCCg -3'
miRNA:   3'- -CGCa--GGUCGGC--GGCC----GCGCCGGC----GGG- -5'
10710 5' -66.9 NC_002794.1 + 154275 0.75 0.137241
Target:  5'- -gGUCCcGaCCGCCGGCGCGGCUcgacggucgaaucgaGCCUc -3'
miRNA:   3'- cgCAGGuC-GGCGGCCGCGCCGG---------------CGGG- -5'
10710 5' -66.9 NC_002794.1 + 153662 0.75 0.13596
Target:  5'- cGCGUCCGGCCGCCGGuUGUgaGGCucgaCGCgCg -3'
miRNA:   3'- -CGCAGGUCGGCGGCC-GCG--CCG----GCGgG- -5'
10710 5' -66.9 NC_002794.1 + 153591 0.71 0.262135
Target:  5'- cGgGUCCAaCaCGCCcuggaagagacGGCGCgGGCCGCCUa -3'
miRNA:   3'- -CgCAGGUcG-GCGG-----------CCGCG-CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 152570 0.71 0.262135
Target:  5'- gGCGcUUCA-CCGCCGcG-GCGGCCGCCa -3'
miRNA:   3'- -CGC-AGGUcGGCGGC-CgCGCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 152156 0.69 0.337424
Target:  5'- cGC-UCCAG-CGCCuGCG-GGCCGCCg -3'
miRNA:   3'- -CGcAGGUCgGCGGcCGCgCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 151940 0.67 0.466129
Target:  5'- aGCGcUCC-GCCGCCcGCGacgaCGGCCccgggugcuccucgGCCCg -3'
miRNA:   3'- -CGC-AGGuCGGCGGcCGC----GCCGG--------------CGGG- -5'
10710 5' -66.9 NC_002794.1 + 151733 0.7 0.297941
Target:  5'- aCGUCguCGGCCGCCGGUcgccucGCGcGCuCGUCCu -3'
miRNA:   3'- cGCAG--GUCGGCGGCCG------CGC-CG-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.