miRNA display CGI


Results 81 - 100 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 108395 0.66 0.512028
Target:  5'- aGCGga-GGCU-CCGGCgGCGGC-GCCCa -3'
miRNA:   3'- -CGCaggUCGGcGGCCG-CGCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 150031 0.66 0.512028
Target:  5'- ---cCCGGCCGCCGaGUG-GaGCCGCUa -3'
miRNA:   3'- cgcaGGUCGGCGGC-CGCgC-CGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 49862 0.66 0.512028
Target:  5'- gGCGgcgCCcGCCacCCGGaCGUGGagCGCCCg -3'
miRNA:   3'- -CGCa--GGuCGGc-GGCC-GCGCCg-GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 76952 0.66 0.512028
Target:  5'- cGCGgagacGCCGuCCGGC-CGGCcCGCCg -3'
miRNA:   3'- -CGCaggu-CGGC-GGCCGcGCCG-GCGGg -5'
10710 5' -66.9 NC_002794.1 + 191793 0.66 0.512028
Target:  5'- aCGUUCGcucGaCCGCCcGCuCGGCCGCUCg -3'
miRNA:   3'- cGCAGGU---C-GGCGGcCGcGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 63663 0.66 0.512028
Target:  5'- aCGUCuCGGaCGaCGaGCGCGGCCGCg- -3'
miRNA:   3'- cGCAG-GUCgGCgGC-CGCGCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 182941 0.66 0.512028
Target:  5'- -aGUCCGG-CGCCgGGCucgagccgacgGCGGCCgGCUCc -3'
miRNA:   3'- cgCAGGUCgGCGG-CCG-----------CGCCGG-CGGG- -5'
10710 5' -66.9 NC_002794.1 + 14144 0.66 0.520902
Target:  5'- cCGUCCGGuCCGUCGucgaGCcccGCCGCCUg -3'
miRNA:   3'- cGCAGGUC-GGCGGCcg--CGc--CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 85471 0.66 0.520902
Target:  5'- gGCGcCCGGCCuCCGGC-CuGUCGUCUg -3'
miRNA:   3'- -CGCaGGUCGGcGGCCGcGcCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 140510 0.66 0.520902
Target:  5'- cGCGacuUCCA-CCGCUGGCGgcaGGCC-CUCg -3'
miRNA:   3'- -CGC---AGGUcGGCGGCCGCg--CCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 86701 0.66 0.529836
Target:  5'- -aGcCCGGUCGCuCGuCGaaGCCGCCCg -3'
miRNA:   3'- cgCaGGUCGGCG-GCcGCgcCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 101671 0.66 0.529836
Target:  5'- cCGUCCGaaaCGCCGGCGgaGcGCgaGCCCg -3'
miRNA:   3'- cGCAGGUcg-GCGGCCGCg-C-CGg-CGGG- -5'
10710 5' -66.9 NC_002794.1 + 74021 0.66 0.529836
Target:  5'- cUGUUCGGCCGCCacCcCGGCC-CCCg -3'
miRNA:   3'- cGCAGGUCGGCGGccGcGCCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 184830 0.66 0.527149
Target:  5'- cGCGUCCGGgcgcaCCgcgcagcgauacguGCCGGa-CGGCCGUUCg -3'
miRNA:   3'- -CGCAGGUC-----GG--------------CGGCCgcGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 21989 0.66 0.520902
Target:  5'- cGCGaCCcGUCGCCGGCaa-GCCGgCCa -3'
miRNA:   3'- -CGCaGGuCGGCGGCCGcgcCGGCgGG- -5'
10710 5' -66.9 NC_002794.1 + 143679 0.66 0.520902
Target:  5'- cGCGUCaggAGCUGCCgcagGGuCGC-GuuGCCCa -3'
miRNA:   3'- -CGCAGg--UCGGCGG----CC-GCGcCggCGGG- -5'
10710 5' -66.9 NC_002794.1 + 121472 0.66 0.520902
Target:  5'- cCGUCgAGacgaCCGCCGGUucggacGCGGCCuccGCCg -3'
miRNA:   3'- cGCAGgUC----GGCGGCCG------CGCCGG---CGGg -5'
10710 5' -66.9 NC_002794.1 + 193965 0.66 0.520902
Target:  5'- cCG-CCA-CCGCCGucaccgcCGCGGCCGCUa -3'
miRNA:   3'- cGCaGGUcGGCGGCc------GCGCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 92717 0.66 0.520902
Target:  5'- cGUGUCgAGCCuGUC-GCGCuGGCUGCUg -3'
miRNA:   3'- -CGCAGgUCGG-CGGcCGCG-CCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 102411 0.66 0.520902
Target:  5'- cGCGaCgCGGCCG-UGGCcgaGGCCGCCa -3'
miRNA:   3'- -CGCaG-GUCGGCgGCCGcg-CCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.