Results 41 - 60 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10711 | 3' | -52.8 | NC_002794.1 | + | 145563 | 0.66 | 0.989163 |
Target: 5'- aCCGGUUCgcggaCGAGcgccgACGG-AGCGGCGGCc -3' miRNA: 3'- -GGUCGAG-----GUUCa----UGCCgUCGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 85282 | 0.66 | 0.987718 |
Target: 5'- cUCGGCUCC-GGUcaGCGGCugagacgaGGCGACGa- -3' miRNA: 3'- -GGUCGAGGuUCA--UGCCG--------UCGUUGUcg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 60870 | 0.66 | 0.987718 |
Target: 5'- gCCGGCUCuCAAGUAcauCGGC-GCcgUGGUc -3' miRNA: 3'- -GGUCGAG-GUUCAU---GCCGuCGuuGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 101568 | 0.66 | 0.986129 |
Target: 5'- gCCGGCgg-GAGUGcCGGCcGCcGCGGCc -3' miRNA: 3'- -GGUCGaggUUCAU-GCCGuCGuUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 122354 | 0.66 | 0.986129 |
Target: 5'- -gAGCaCCGAGgucugcUACGGCGGCAGCu-- -3' miRNA: 3'- ggUCGaGGUUC------AUGCCGUCGUUGucg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 61891 | 0.66 | 0.986129 |
Target: 5'- gCCGcGCggCGAGcGCGGCgAGC-GCAGCg -3' miRNA: 3'- -GGU-CGagGUUCaUGCCG-UCGuUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 36361 | 0.66 | 0.986129 |
Target: 5'- gCGGCcaCCGGGUGCGcgcccGCGGCGaaGCGGUc -3' miRNA: 3'- gGUCGa-GGUUCAUGC-----CGUCGU--UGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 190599 | 0.66 | 0.986129 |
Target: 5'- gCAGCUCCucca--GGUccGCGACAGCc -3' miRNA: 3'- gGUCGAGGuucaugCCGu-CGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 188980 | 0.66 | 0.986129 |
Target: 5'- cCCAGCUcggCCAccAGccaGCGGCAGCucuccaggucgcGACAGg -3' miRNA: 3'- -GGUCGA---GGU--UCa--UGCCGUCG------------UUGUCg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 151918 | 0.66 | 0.986129 |
Target: 5'- gCCgAGCUCCGucUGCGGC-GCA--AGCg -3' miRNA: 3'- -GG-UCGAGGUucAUGCCGuCGUugUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 122944 | 0.66 | 0.986129 |
Target: 5'- gCGGaaCC-GGUGCGGCuggAGCGugAGCc -3' miRNA: 3'- gGUCgaGGuUCAUGCCG---UCGUugUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 57310 | 0.66 | 0.987718 |
Target: 5'- aCC-GCgaccCCGAGUACcuGCAGCGcguccugcuGCAGCu -3' miRNA: 3'- -GGuCGa---GGUUCAUGc-CGUCGU---------UGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 184741 | 0.66 | 0.986129 |
Target: 5'- gCCAGgUCCGcgccGGUccagcguuccACGGuCAGCGcCGGCu -3' miRNA: 3'- -GGUCgAGGU----UCA----------UGCC-GUCGUuGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 71578 | 0.66 | 0.987718 |
Target: 5'- uCCGGUacacgcgcuUCCAc-UGCGGCugGGCgAACAGCa -3' miRNA: 3'- -GGUCG---------AGGUucAUGCCG--UCG-UUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 67398 | 0.66 | 0.987718 |
Target: 5'- gCCAGCgucggcgCCAGcGU-CGGCgccAGCGucgGCGGCg -3' miRNA: 3'- -GGUCGa------GGUU-CAuGCCG---UCGU---UGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 155909 | 0.67 | 0.980409 |
Target: 5'- aCCGGCUCgAcGUGCGG-AGcCGGguGCu -3' miRNA: 3'- -GGUCGAGgUuCAUGCCgUC-GUUguCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 38628 | 0.67 | 0.980409 |
Target: 5'- cCCGaCUCgCcGGUGCGGC-GCGACGGa -3' miRNA: 3'- -GGUcGAG-GuUCAUGCCGuCGUUGUCg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 150716 | 0.67 | 0.980409 |
Target: 5'- aUCGaCUUCGAcGUGCGGCGGCuGACcGCg -3' miRNA: 3'- -GGUcGAGGUU-CAUGCCGUCG-UUGuCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 75610 | 0.67 | 0.981259 |
Target: 5'- aCGGCUCCGugaucccggucuGGUacccuuucucgcuacACacgaGCGGCAGCGGCg -3' miRNA: 3'- gGUCGAGGU------------UCA---------------UGc---CGUCGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 184221 | 0.67 | 0.980409 |
Target: 5'- aCCAGCUCCcggcccAGUuccCGGCccaGGCucCGGCc -3' miRNA: 3'- -GGUCGAGGu-----UCAu--GCCG---UCGuuGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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