Results 81 - 100 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10711 | 3' | -52.8 | NC_002794.1 | + | 45571 | 0.67 | 0.980409 |
Target: 5'- -gGGCUCguAGaagAUgGGCGGCAGCAGg -3' miRNA: 3'- ggUCGAGguUCa--UG-CCGUCGUUGUCg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 126611 | 0.67 | 0.980409 |
Target: 5'- gCCGGCgCCGAcGUcGCGGCGugagcGCGACcgGGCg -3' miRNA: 3'- -GGUCGaGGUU-CA-UGCCGU-----CGUUG--UCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 56352 | 0.67 | 0.980409 |
Target: 5'- gCAGCUCgAAGa--GGCGGuCGACGuGCu -3' miRNA: 3'- gGUCGAGgUUCaugCCGUC-GUUGU-CG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 184221 | 0.67 | 0.980409 |
Target: 5'- aCCAGCUCCcggcccAGUuccCGGCccaGGCucCGGCc -3' miRNA: 3'- -GGUCGAGGu-----UCAu--GCCG---UCGuuGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 155909 | 0.67 | 0.980409 |
Target: 5'- aCCGGCUCgAcGUGCGG-AGcCGGguGCu -3' miRNA: 3'- -GGUCGAGgUuCAUGCCgUC-GUUguCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 38628 | 0.67 | 0.980409 |
Target: 5'- cCCGaCUCgCcGGUGCGGC-GCGACGGa -3' miRNA: 3'- -GGUcGAG-GuUCAUGCCGuCGUUGUCg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 150716 | 0.67 | 0.980409 |
Target: 5'- aUCGaCUUCGAcGUGCGGCGGCuGACcGCg -3' miRNA: 3'- -GGUcGAGGUU-CAUGCCGUCG-UUGuCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 75610 | 0.67 | 0.981259 |
Target: 5'- aCGGCUCCGugaucccggucuGGUacccuuucucgcuacACacgaGCGGCAGCGGCg -3' miRNA: 3'- gGUCGAGGU------------UCA---------------UGc---CGUCGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 118162 | 0.67 | 0.980409 |
Target: 5'- -gGGCUCaGGGUGucguaGGCGGCGACGcGCc -3' miRNA: 3'- ggUCGAGgUUCAUg----CCGUCGUUGU-CG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 62066 | 0.67 | 0.980409 |
Target: 5'- gCCGGCggcgacgCCG---GCGGCGaCGACGGCg -3' miRNA: 3'- -GGUCGa------GGUucaUGCCGUcGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 127166 | 0.67 | 0.980192 |
Target: 5'- aCCAcCUCCAcccucgccgcAGUcgucgccGCGGCcgcagccgcAGCAGCAGCc -3' miRNA: 3'- -GGUcGAGGU----------UCA-------UGCCG---------UCGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 54701 | 0.67 | 0.978158 |
Target: 5'- aCAGaaaCUCCAGGUACGaGCcGCGGauguugacguuCAGCg -3' miRNA: 3'- gGUC---GAGGUUCAUGC-CGuCGUU-----------GUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 25147 | 0.67 | 0.978158 |
Target: 5'- aCGGUaggCCAGcGUGauaGGCAGCcaGGCAGCc -3' miRNA: 3'- gGUCGa--GGUU-CAUg--CCGUCG--UUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 66575 | 0.67 | 0.978158 |
Target: 5'- gCCGGCgCCG---GCGGCAGCcccGAguGCu -3' miRNA: 3'- -GGUCGaGGUucaUGCCGUCG---UUguCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 108440 | 0.67 | 0.978158 |
Target: 5'- aCCGGCggCAcucGCGGCGGCGGCccgccGGCa -3' miRNA: 3'- -GGUCGagGUucaUGCCGUCGUUG-----UCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 183689 | 0.67 | 0.978158 |
Target: 5'- uCgAGCgcccgCCGcGcGCGGCGGC-ACAGCc -3' miRNA: 3'- -GgUCGa----GGUuCaUGCCGUCGuUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 190736 | 0.67 | 0.978158 |
Target: 5'- gCAGCgcccgccgCCGucucgACGGgGGCGGCGGCc -3' miRNA: 3'- gGUCGa-------GGUuca--UGCCgUCGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 14653 | 0.67 | 0.978852 |
Target: 5'- gCCGGCgccgcggcgucggUCCGAcucGCGGCGGCGgucgcgcugcuccugACGGCg -3' miRNA: 3'- -GGUCG-------------AGGUUca-UGCCGUCGU---------------UGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 188341 | 0.67 | 0.978158 |
Target: 5'- gCCGGCggcgCCGucgcgcccGUcCGGcCGGCGGCGGCc -3' miRNA: 3'- -GGUCGa---GGUu-------CAuGCC-GUCGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 115393 | 0.67 | 0.978158 |
Target: 5'- gCCGGC-CCGuGcUGCGGacucCAGUGGCGGCa -3' miRNA: 3'- -GGUCGaGGUuC-AUGCC----GUCGUUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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