miRNA display CGI


Results 101 - 120 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 190736 0.67 0.978158
Target:  5'- gCAGCgcccgccgCCGucucgACGGgGGCGGCGGCc -3'
miRNA:   3'- gGUCGa-------GGUuca--UGCCgUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 14653 0.67 0.978852
Target:  5'- gCCGGCgccgcggcgucggUCCGAcucGCGGCGGCGgucgcgcugcuccugACGGCg -3'
miRNA:   3'- -GGUCG-------------AGGUUca-UGCCGUCGU---------------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 188341 0.67 0.978158
Target:  5'- gCCGGCggcgCCGucgcgcccGUcCGGcCGGCGGCGGCc -3'
miRNA:   3'- -GGUCGa---GGUu-------CAuGCC-GUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 115393 0.67 0.978158
Target:  5'- gCCGGC-CCGuGcUGCGGacucCAGUGGCGGCa -3'
miRNA:   3'- -GGUCGaGGUuC-AUGCC----GUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 48205 0.68 0.963976
Target:  5'- gCCGGcCUUCGAGguagaGGCAGagcaGGCGGCc -3'
miRNA:   3'- -GGUC-GAGGUUCaug--CCGUCg---UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 57399 0.68 0.961921
Target:  5'- aCCGGCUCCGgcgcccgcguggccgGcGUGCuGGuCGGC-ACGGCg -3'
miRNA:   3'- -GGUCGAGGU---------------U-CAUG-CC-GUCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 127796 0.68 0.960507
Target:  5'- gCCGGCUCCGAGUcgACGcCgAGCG--AGCg -3'
miRNA:   3'- -GGUCGAGGUUCA--UGCcG-UCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 13331 0.68 0.960507
Target:  5'- aCC-GCUCCcccGGU-CGGgGGUGGCGGCg -3'
miRNA:   3'- -GGuCGAGGu--UCAuGCCgUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 108874 0.68 0.960507
Target:  5'- aCCGGgUCCAAcucggcGUGCGcGguGUacGACGGCg -3'
miRNA:   3'- -GGUCgAGGUU------CAUGC-CguCG--UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 184356 0.68 0.960507
Target:  5'- gCAGCUCgCA---GCGGCGcuccCAGCAGCg -3'
miRNA:   3'- gGUCGAG-GUucaUGCCGUc---GUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 48930 0.68 0.960507
Target:  5'- gCCAGCgCCAGGcgcuCGGCGaccucuucGCAgACGGCg -3'
miRNA:   3'- -GGUCGaGGUUCau--GCCGU--------CGU-UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 44073 0.68 0.963976
Target:  5'- gCC-GCUCguGGUGacauaccgGGCAGUAACGGUg -3'
miRNA:   3'- -GGuCGAGguUCAUg-------CCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 63071 0.68 0.963976
Target:  5'- gCgAGCUCCuGGgcCGGCuGUAcuuCAGCg -3'
miRNA:   3'- -GgUCGAGGuUCauGCCGuCGUu--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 114209 0.68 0.963976
Target:  5'- gCCGGCgucUCCG---GCGGCAGCcagccgauCAGCg -3'
miRNA:   3'- -GGUCG---AGGUucaUGCCGUCGuu------GUCG- -5'
10711 3' -52.8 NC_002794.1 + 142369 0.68 0.963976
Target:  5'- gCGGCggaggCgGAGggaGCGGCGGaGACGGCg -3'
miRNA:   3'- gGUCGa----GgUUCa--UGCCGUCgUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 32905 0.68 0.963976
Target:  5'- gCGGaaCCAGucggGCGGCAGCAGguCGGCg -3'
miRNA:   3'- gGUCgaGGUUca--UGCCGUCGUU--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 32157 0.68 0.963976
Target:  5'- aCAGCUCCGA--GCGGUGGCccGCcuGGCc -3'
miRNA:   3'- gGUCGAGGUUcaUGCCGUCGu-UG--UCG- -5'
10711 3' -52.8 NC_002794.1 + 179518 0.68 0.963976
Target:  5'- aCC-GCUgCCAGGUcuguuucgacgACGGCGGUAGCcccGCg -3'
miRNA:   3'- -GGuCGA-GGUUCA-----------UGCCGUCGUUGu--CG- -5'
10711 3' -52.8 NC_002794.1 + 46781 0.68 0.963976
Target:  5'- cCCAGCg------GCGGCGGCGACAaaaGCa -3'
miRNA:   3'- -GGUCGagguucaUGCCGUCGUUGU---CG- -5'
10711 3' -52.8 NC_002794.1 + 20759 0.68 0.960507
Target:  5'- gCCAGCUCUcGGaACGGC-GCG--AGCa -3'
miRNA:   3'- -GGUCGAGGuUCaUGCCGuCGUugUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.