miRNA display CGI


Results 141 - 160 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 147683 0.69 0.934852
Target:  5'- --cGCUCgAGGaccCGGCGGCGauGCGGCg -3'
miRNA:   3'- gguCGAGgUUCau-GCCGUCGU--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 71357 0.69 0.934852
Target:  5'- gCGGCgcagCAGGUGCGGCAGCcgcccCAGg -3'
miRNA:   3'- gGUCGag--GUUCAUGCCGUCGuu---GUCg -5'
10711 3' -52.8 NC_002794.1 + 123396 0.69 0.934852
Target:  5'- cCCugcuGCUCCGcgucggcguggAGUACGaCAGCGACgaGGCg -3'
miRNA:   3'- -GGu---CGAGGU-----------UCAUGCcGUCGUUG--UCG- -5'
10711 3' -52.8 NC_002794.1 + 190963 0.69 0.92974
Target:  5'- aCCAGCgCCucGg--GGCAGCAgagcagGCAGCg -3'
miRNA:   3'- -GGUCGaGGuuCaugCCGUCGU------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 180579 0.69 0.92974
Target:  5'- cCCAGUugUCCc---ACGGCAGCAGCuGUc -3'
miRNA:   3'- -GGUCG--AGGuucaUGCCGUCGUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 186266 0.69 0.92974
Target:  5'- aCCGGaucaccgCCuGGcGCGGCGGCAccGCGGCc -3'
miRNA:   3'- -GGUCga-----GGuUCaUGCCGUCGU--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 114860 0.69 0.92974
Target:  5'- cCCGccGCUCCAGcgccuCGaGCAGCuGCAGCg -3'
miRNA:   3'- -GGU--CGAGGUUcau--GC-CGUCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 184567 0.69 0.92974
Target:  5'- cUCAcGCgCCGcc-GCGGCGGCGGCGGCc -3'
miRNA:   3'- -GGU-CGaGGUucaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 129187 0.69 0.934852
Target:  5'- aUCGGcCUCCGGGUcgACGaccgaGCGGCcGACGGCg -3'
miRNA:   3'- -GGUC-GAGGUUCA--UGC-----CGUCG-UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 45837 0.69 0.939721
Target:  5'- gCAGCUCCccgucGUAC-GCGGC-GCGGCu -3'
miRNA:   3'- gGUCGAGGuu---CAUGcCGUCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 29197 0.69 0.939721
Target:  5'- aCCAG-UCCGuccGUcCGGCGGuCGGCGGCc -3'
miRNA:   3'- -GGUCgAGGUu--CAuGCCGUC-GUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 101272 0.69 0.94435
Target:  5'- cCCGGCgCCGG---UGGCGGCGGCGGg -3'
miRNA:   3'- -GGUCGaGGUUcauGCCGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 179919 0.69 0.946134
Target:  5'- gCGGCUCCGacGGUuucgaagacgacgucGCgGGCcggggagcgAGCGACAGCa -3'
miRNA:   3'- gGUCGAGGU--UCA---------------UG-CCG---------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 113830 0.69 0.94435
Target:  5'- cUCGGcCUCCAGGUGCuucuGCAGCcuggcguGCAGUu -3'
miRNA:   3'- -GGUC-GAGGUUCAUGc---CGUCGu------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 18541 0.69 0.94435
Target:  5'- gCgAGCa-CGAGcACGGCGGCGACcGCg -3'
miRNA:   3'- -GgUCGagGUUCaUGCCGUCGUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 47743 0.69 0.94435
Target:  5'- gCCGGgUCCAcGUgGCGGCcguGGUcGCGGCa -3'
miRNA:   3'- -GGUCgAGGUuCA-UGCCG---UCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 130310 0.69 0.943443
Target:  5'- aCGGCgagauguccuggCCGAG-ACGGCGGacgaaGGCGGCg -3'
miRNA:   3'- gGUCGa-----------GGUUCaUGCCGUCg----UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 115549 0.69 0.939721
Target:  5'- uCCAGCUCgGGGgaguagcCGaGCAGCu-CGGCg -3'
miRNA:   3'- -GGUCGAGgUUCau-----GC-CGUCGuuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 118654 0.69 0.943443
Target:  5'- gCCAGCUCgUccGUgggcgcgacgcccGCGGCcgccgccGGCGGCAGCg -3'
miRNA:   3'- -GGUCGAG-GuuCA-------------UGCCG-------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 48876 0.69 0.92974
Target:  5'- gUCGGCggCCAGGUGgcaGGCcAGCGuugccGCAGCu -3'
miRNA:   3'- -GGUCGa-GGUUCAUg--CCG-UCGU-----UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.