miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 119434 0.78 0.508667
Target:  5'- gCAGgUCCGAcGgcgGCGGCGGUGGCGGCg -3'
miRNA:   3'- gGUCgAGGUU-Ca--UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 114696 0.78 0.538382
Target:  5'- cCCGGacCUCCugcGAGacggACGGCGGCGGCGGCg -3'
miRNA:   3'- -GGUC--GAGG---UUCa---UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 19441 0.78 0.538382
Target:  5'- aCCAgGCcCCGAGcgggcacgaGCGGCGGCGGCGGCg -3'
miRNA:   3'- -GGU-CGaGGUUCa--------UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 104576 0.78 0.489246
Target:  5'- aCCAGCUUCAGGUuguuGCGGCA-CGAguGCa -3'
miRNA:   3'- -GGUCGAGGUUCA----UGCCGUcGUUguCG- -5'
10711 3' -52.8 NC_002794.1 + 78363 0.78 0.498915
Target:  5'- gCAGCUCCAAc-ACGGCcugcuccgccAGCGACGGCg -3'
miRNA:   3'- gGUCGAGGUUcaUGCCG----------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 116924 0.77 0.565618
Target:  5'- gUCGGCUCCGGcGUcgucggcguccccgGCGGCGGCGuCGGCg -3'
miRNA:   3'- -GGUCGAGGUU-CA--------------UGCCGUCGUuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 107862 0.77 0.57274
Target:  5'- aCCuGCUCCAcugcaucgcggaggcGGcGCGGCGGguGCGGCu -3'
miRNA:   3'- -GGuCGAGGU---------------UCaUGCCGUCguUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 191984 0.77 0.578862
Target:  5'- aCGGCUCCuccgacggccGGG-ACGGUAGCGGCGGUg -3'
miRNA:   3'- gGUCGAGG----------UUCaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 129928 0.77 0.568668
Target:  5'- gCCAGg-CCGuGgcgACGGCGGCGGCGGCg -3'
miRNA:   3'- -GGUCgaGGUuCa--UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 41277 0.77 0.548421
Target:  5'- --cGCUCCGAGaACGGCGGCGGCuccgacGCg -3'
miRNA:   3'- gguCGAGGUUCaUGCCGUCGUUGu-----CG- -5'
10711 3' -52.8 NC_002794.1 + 147960 0.77 0.589095
Target:  5'- cCgGGCUCCGAGcGCGuGCAGCGugugGCGGUg -3'
miRNA:   3'- -GgUCGAGGUUCaUGC-CGUCGU----UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 53052 0.76 0.613771
Target:  5'- gCGGCUCCAGcGUA-GGCAGCGccgcgccgccagcucGCGGCa -3'
miRNA:   3'- gGUCGAGGUU-CAUgCCGUCGU---------------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 92232 0.76 0.59936
Target:  5'- gCCGGCgacgCCAAGgagcccucgGCGGCgucgcuGGCGGCGGCg -3'
miRNA:   3'- -GGUCGa---GGUUCa--------UGCCG------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 142195 0.75 0.6509
Target:  5'- gCGGCagUgCGGGaagcgGCGGCGGCAGCGGCg -3'
miRNA:   3'- gGUCG--AgGUUCa----UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 120975 0.75 0.702052
Target:  5'- cCCGGcCUgCGAGUuCGuGUAGCGGCGGCg -3'
miRNA:   3'- -GGUC-GAgGUUCAuGC-CGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 103588 0.75 0.691905
Target:  5'- gCAGCggUCGGGca-GGCAGCGGCGGCa -3'
miRNA:   3'- gGUCGa-GGUUCaugCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 154361 0.75 0.681707
Target:  5'- cCCGcGCggUCCAGGccGCGGCGGCGGCGGg -3'
miRNA:   3'- -GGU-CG--AGGUUCa-UGCCGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 79411 0.75 0.661196
Target:  5'- cCCuGUUcgacaagaCCAAGggcccgGCGGCGGCGGCGGCg -3'
miRNA:   3'- -GGuCGA--------GGUUCa-----UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 115168 0.75 0.671468
Target:  5'- aCCAGCUCCuGGUagACGGCccGGUGcCGGCg -3'
miRNA:   3'- -GGUCGAGGuUCA--UGCCG--UCGUuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 41488 0.75 0.702052
Target:  5'- aCAGCaggucggaCAAGUACGGCuuCAGCAGCu -3'
miRNA:   3'- gGUCGag------GUUCAUGCCGucGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.