miRNA display CGI


Results 61 - 80 of 314 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 112999 0.73 0.796867
Target:  5'- gCAGCUCCAGGaGCGagcGCAGCuugccguucugcGCGGCg -3'
miRNA:   3'- gGUCGAGGUUCaUGC---CGUCGu-----------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 143287 0.73 0.789555
Target:  5'- gCC-GCUCgGGGUcggGCGGguGCAgcGCGGCg -3'
miRNA:   3'- -GGuCGAGgUUCA---UGCCguCGU--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 179682 0.73 0.789555
Target:  5'- gCGGCggCGAcGgugGCGGCGGCGACGGUg -3'
miRNA:   3'- gGUCGagGUU-Ca--UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 142474 0.73 0.789555
Target:  5'- gCCGGCaCCGuggacgcGUGCGGCGcCGGCAGCg -3'
miRNA:   3'- -GGUCGaGGUu------CAUGCCGUcGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 126357 0.73 0.787712
Target:  5'- cCCGGCUCCGauuucgccgcugcguGGgcgccggggccugcGCGGCGGCGugcGCGGCg -3'
miRNA:   3'- -GGUCGAGGU---------------UCa-------------UGCCGUCGU---UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 47333 0.73 0.79868
Target:  5'- cCCGGCUCCc---GCGGCGGCGGCc-- -3'
miRNA:   3'- -GGUCGAGGuucaUGCCGUCGUUGucg -5'
10711 3' -52.8 NC_002794.1 + 108400 0.73 0.780285
Target:  5'- -aGGCUCCG---GCGGCGGCGcccaccACGGCg -3'
miRNA:   3'- ggUCGAGGUucaUGCCGUCGU------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 91868 0.73 0.77088
Target:  5'- -gGGUcCCGGGggUGGCGGCGGCGGCc -3'
miRNA:   3'- ggUCGaGGUUCauGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 140086 0.73 0.780285
Target:  5'- gCCAGCaggacgUCCAuGGU-CGGCGGCGaucgACGGCg -3'
miRNA:   3'- -GGUCG------AGGU-UCAuGCCGUCGU----UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 94448 0.73 0.780285
Target:  5'- aCGGCgCgGAGgaguCGGUGGCGACGGCa -3'
miRNA:   3'- gGUCGaGgUUCau--GCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 147110 0.73 0.767082
Target:  5'- cCCGGC-CCAAGgacgaagacgucgACGGCGGUucgaGACGGCc -3'
miRNA:   3'- -GGUCGaGGUUCa------------UGCCGUCG----UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 153117 0.73 0.761349
Target:  5'- cUCGaCUUCGGGUuCGGUGGCGGCAGCg -3'
miRNA:   3'- -GGUcGAGGUUCAuGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 82011 0.73 0.795958
Target:  5'- gCCGGCcgcugacgCCGAaacccgacgaucgcGUggGCGGCGGCGGCGGCg -3'
miRNA:   3'- -GGUCGa-------GGUU--------------CA--UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 37738 0.73 0.79868
Target:  5'- gCGGCgCCGccgGCGGCGGCGcgGCGGCg -3'
miRNA:   3'- gGUCGaGGUucaUGCCGUCGU--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 16831 0.73 0.79868
Target:  5'- gCAGCagCAGcaGCaGCAGCAGCAGCa -3'
miRNA:   3'- gGUCGagGUUcaUGcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 18691 0.73 0.77088
Target:  5'- gCCGuCUCC-GGcACGGCGGCGGCGGUc -3'
miRNA:   3'- -GGUcGAGGuUCaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 110473 0.73 0.780285
Target:  5'- gUCGGCUCgGGGgguagagaGGCGGUGGCGGCg -3'
miRNA:   3'- -GGUCGAGgUUCaug-----CCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 87044 0.73 0.780285
Target:  5'- aCCGGCgcggcucggggCCGGGUcCuGUAGCGACAGCa -3'
miRNA:   3'- -GGUCGa----------GGUUCAuGcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 194130 0.72 0.807653
Target:  5'- aCGGCU--GAGgcaGCGGCcGCAGCAGCg -3'
miRNA:   3'- gGUCGAggUUCa--UGCCGuCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 130442 0.72 0.807653
Target:  5'- uCCAgGCgUCCGuGUugGGCGGCGaggcgcugGCGGCu -3'
miRNA:   3'- -GGU-CG-AGGUuCAugCCGUCGU--------UGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.