Results 101 - 120 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10711 | 3' | -52.8 | NC_002794.1 | + | 53572 | 0.71 | 0.849127 |
Target: 5'- gCCAGCUCCGAcagaaacaccGUGuCGGCgucGGCGucaccgggccgccGCAGCg -3' miRNA: 3'- -GGUCGAGGUU----------CAU-GCCG---UCGU-------------UGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 150842 | 0.71 | 0.849926 |
Target: 5'- gUCAGCUCCA---GCGGCGGCcGCGu- -3' miRNA: 3'- -GGUCGAGGUucaUGCCGUCGuUGUcg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 43345 | 0.71 | 0.849926 |
Target: 5'- gCCGGUugaagUCCGAGUGCGGCucgGACAGg -3' miRNA: 3'- -GGUCG-----AGGUUCAUGCCGucgUUGUCg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 125563 | 0.71 | 0.849926 |
Target: 5'- uUCGGCgacgCCAAGga-GGagAGCGACAGCg -3' miRNA: 3'- -GGUCGa---GGUUCaugCCg-UCGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 92958 | 0.71 | 0.887203 |
Target: 5'- aCCGGC-CCAucccGcGCGGCGGCAAggggcugcccguCAGCg -3' miRNA: 3'- -GGUCGaGGUu---CaUGCCGUCGUU------------GUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 8292 | 0.71 | 0.887203 |
Target: 5'- uCCAGCUCCGAcgaggAgGGCGaaGGCGGCa -3' miRNA: 3'- -GGUCGAGGUUca---UgCCGUcgUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 56139 | 0.71 | 0.887203 |
Target: 5'- gCAGCgugucGUACGGCGugccGCAGCGGCa -3' miRNA: 3'- gGUCGagguuCAUGCCGU----CGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 115744 | 0.71 | 0.880185 |
Target: 5'- cCCuGgaUCAGGUACGGC-GCGAuCGGCg -3' miRNA: 3'- -GGuCgaGGUUCAUGCCGuCGUU-GUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 113610 | 0.71 | 0.880185 |
Target: 5'- uCCAGCgccgcggCCAGGUucaGGUugaacgucucgAGCAGCGGCc -3' miRNA: 3'- -GGUCGa------GGUUCAug-CCG-----------UCGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 113701 | 0.71 | 0.865483 |
Target: 5'- gCAGCgCCAGGUucuggcucagggACGGCgucGGCGACuGCa -3' miRNA: 3'- gGUCGaGGUUCA------------UGCCG---UCGUUGuCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 127341 | 0.71 | 0.880185 |
Target: 5'- gCC-GCUgCCGAG-ACGcucGCGGCGGCGGCg -3' miRNA: 3'- -GGuCGA-GGUUCaUGC---CGUCGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 193065 | 0.71 | 0.880185 |
Target: 5'- aCCGGCUgCGGGccgucGCGGgaCAGCcGCAGCa -3' miRNA: 3'- -GGUCGAgGUUCa----UGCC--GUCGuUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 13278 | 0.71 | 0.880185 |
Target: 5'- gCGGCcgCUGuugACGGCGGCAugGGCg -3' miRNA: 3'- gGUCGa-GGUucaUGCCGUCGUugUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 120062 | 0.71 | 0.865483 |
Target: 5'- gCGGCcgCgGAGgccgacGCGGCGGUGGCGGCg -3' miRNA: 3'- gGUCGa-GgUUCa-----UGCCGUCGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 183130 | 0.71 | 0.880185 |
Target: 5'- gCGGCUCCc-GUACGcGCAGCuccGCGGa -3' miRNA: 3'- gGUCGAGGuuCAUGC-CGUCGu--UGUCg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 21458 | 0.7 | 0.912948 |
Target: 5'- cUCGGCgucgCCGugacGGcaACGGUGGCAGCGGCu -3' miRNA: 3'- -GGUCGa---GGU----UCa-UGCCGUCGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 107213 | 0.7 | 0.918788 |
Target: 5'- cCCGGCgccgCCGG--GCGGCGcGCGACGGg -3' miRNA: 3'- -GGUCGa---GGUUcaUGCCGU-CGUUGUCg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 190007 | 0.7 | 0.912948 |
Target: 5'- aUCGGCccgUCCGGGUccauCGGCGGcCggUAGCg -3' miRNA: 3'- -GGUCG---AGGUUCAu---GCCGUC-GuuGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 141133 | 0.7 | 0.912948 |
Target: 5'- cCCGGCUCCGAGUcgccgaagccgGCGGaucccGCGACGa- -3' miRNA: 3'- -GGUCGAGGUUCA-----------UGCCgu---CGUUGUcg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 47838 | 0.7 | 0.918788 |
Target: 5'- gCAGCUCC-GGU-C-GCAGCAgGCGGCg -3' miRNA: 3'- gGUCGAGGuUCAuGcCGUCGU-UGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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