miRNA display CGI


Results 121 - 140 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 179976 0.7 0.906867
Target:  5'- gCGGCaggagCCAAG-GCGGUGGCcgcGACGGCg -3'
miRNA:   3'- gGUCGa----GGUUCaUGCCGUCG---UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 105632 0.7 0.906867
Target:  5'- aCCAGC-CCGAGUACGcGUucuccgucucGCcGCGGCg -3'
miRNA:   3'- -GGUCGaGGUUCAUGC-CGu---------CGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 187225 0.7 0.906867
Target:  5'- gCGGCUCCGGcugGCcGCAGCAcagAUAGCg -3'
miRNA:   3'- gGUCGAGGUUca-UGcCGUCGU---UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 103751 0.7 0.912948
Target:  5'- uCCAGgUCCGGGUACuccucgaagauGGCGuGCAucuccgGCGGCu -3'
miRNA:   3'- -GGUCgAGGUUCAUG-----------CCGU-CGU------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 190007 0.7 0.912948
Target:  5'- aUCGGCccgUCCGGGUccauCGGCGGcCggUAGCg -3'
miRNA:   3'- -GGUCG---AGGUUCAu---GCCGUC-GuuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 141133 0.7 0.912948
Target:  5'- cCCGGCUCCGAGUcgccgaagccgGCGGaucccGCGACGa- -3'
miRNA:   3'- -GGUCGAGGUUCA-----------UGCCgu---CGUUGUcg -5'
10711 3' -52.8 NC_002794.1 + 26175 0.7 0.898605
Target:  5'- cCCAGCUCCGc--GCGGgAGCGGugacgauuuuugauCAGCa -3'
miRNA:   3'- -GGUCGAGGUucaUGCCgUCGUU--------------GUCG- -5'
10711 3' -52.8 NC_002794.1 + 189121 0.7 0.912948
Target:  5'- gCCAGguggUCCAAGUGCGGggccgcCAGCGccagacucucccGCGGCa -3'
miRNA:   3'- -GGUCg---AGGUUCAUGCC------GUCGU------------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 188876 0.7 0.906867
Target:  5'- aCAGCagCAGGaACGGCcAGCAGUGGCg -3'
miRNA:   3'- gGUCGagGUUCaUGCCG-UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 118248 0.7 0.903104
Target:  5'- gUCGGCgggcuggaggucggCCGGG-GCGGCGGCGcCGGCg -3'
miRNA:   3'- -GGUCGa-------------GGUUCaUGCCGUCGUuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 107213 0.7 0.918788
Target:  5'- cCCGGCgccgCCGG--GCGGCGcGCGACGGg -3'
miRNA:   3'- -GGUCGa---GGUUcaUGCCGU-CGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 66722 0.7 0.900547
Target:  5'- aCGGCcgccgCCAccgccgGCGGUGGCGGCGGCg -3'
miRNA:   3'- gGUCGa----GGUuca---UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 182740 0.7 0.912948
Target:  5'- gCGGCcCCAgaaagacgcGGUACaGGUAGCAGCcGCa -3'
miRNA:   3'- gGUCGaGGU---------UCAUG-CCGUCGUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 64990 0.7 0.918788
Target:  5'- cCCAGCUgCAcugGCGGCAGUGGaaccuCAGCc -3'
miRNA:   3'- -GGUCGAgGUucaUGCCGUCGUU-----GUCG- -5'
10711 3' -52.8 NC_002794.1 + 112305 0.7 0.893992
Target:  5'- cCCGGgUCCGAcuuCGGCGcCGACGGCg -3'
miRNA:   3'- -GGUCgAGGUUcauGCCGUcGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 148631 0.7 0.900547
Target:  5'- -gGGuCUCCGAucGCGGCGGCGugcuCGGCu -3'
miRNA:   3'- ggUC-GAGGUUcaUGCCGUCGUu---GUCG- -5'
10711 3' -52.8 NC_002794.1 + 127091 0.7 0.900547
Target:  5'- aCCGGC-UgGAGaGCGGCGGCucgccgaugAACAGCu -3'
miRNA:   3'- -GGUCGaGgUUCaUGCCGUCG---------UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 42230 0.7 0.906867
Target:  5'- aUCAGC-CgCGAG-ACGGCGGCGACGa- -3'
miRNA:   3'- -GGUCGaG-GUUCaUGCCGUCGUUGUcg -5'
10711 3' -52.8 NC_002794.1 + 47838 0.7 0.918788
Target:  5'- gCAGCUCC-GGU-C-GCAGCAgGCGGCg -3'
miRNA:   3'- gGUCGAGGuUCAuGcCGUCGU-UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 8106 0.7 0.899902
Target:  5'- uCUAGCgccaCCGAGcgggcgGCGGCcuccucggugaccGGCGACGGCa -3'
miRNA:   3'- -GGUCGa---GGUUCa-----UGCCG-------------UCGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.