miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 37881 0.75 0.681707
Target:  5'- uCgGGCggCGGGggcggugGCGGCGGCAGCGGCu -3'
miRNA:   3'- -GgUCGagGUUCa------UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 103588 0.75 0.691905
Target:  5'- gCAGCggUCGGGca-GGCAGCGGCGGCa -3'
miRNA:   3'- gGUCGa-GGUUCaugCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 41488 0.75 0.702052
Target:  5'- aCAGCaggucggaCAAGUACGGCuuCAGCAGCu -3'
miRNA:   3'- gGUCGag------GUUCAUGCCGucGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 120975 0.75 0.702052
Target:  5'- cCCGGcCUgCGAGUuCGuGUAGCGGCGGCg -3'
miRNA:   3'- -GGUC-GAgGUUCAuGC-CGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 146987 0.74 0.712139
Target:  5'- gUCGGCgccgccggCCGAcGU-CGGCGGCGGCGGCc -3'
miRNA:   3'- -GGUCGa-------GGUU-CAuGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 119694 0.74 0.712139
Target:  5'- uCCGGCUgCuGGgcCGGCGGCcacAACGGCg -3'
miRNA:   3'- -GGUCGAgGuUCauGCCGUCG---UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 110876 0.74 0.712139
Target:  5'- uCCGGCacguucUCCAGGUGCcgGGcCAGCAAgAGCc -3'
miRNA:   3'- -GGUCG------AGGUUCAUG--CC-GUCGUUgUCG- -5'
10711 3' -52.8 NC_002794.1 + 50760 0.74 0.722157
Target:  5'- uCC-GCcCCGG--GCGGCGGCGACGGCg -3'
miRNA:   3'- -GGuCGaGGUUcaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 62909 0.74 0.729124
Target:  5'- aCCAGCUCCGcGUguaccguaagcacuACGGCcgcuGCGugGGCu -3'
miRNA:   3'- -GGUCGAGGUuCA--------------UGCCGu---CGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 138417 0.74 0.732097
Target:  5'- gCCGGCcgCCGAcucGUcgagccGCGGUGGCGGCGGCg -3'
miRNA:   3'- -GGUCGa-GGUU---CA------UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 184319 0.74 0.732097
Target:  5'- aCGGCUCCGcucACGGcCGGgGACAGCg -3'
miRNA:   3'- gGUCGAGGUucaUGCC-GUCgUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 60581 0.74 0.736049
Target:  5'- -gAGCUCCAcgccgggccugcuggAGgcGCaGCAGCAACAGCa -3'
miRNA:   3'- ggUCGAGGU---------------UCa-UGcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 55288 0.74 0.741948
Target:  5'- gCGGCgaCGAGggcgGCGGCGGCGucGCGGCg -3'
miRNA:   3'- gGUCGagGUUCa---UGCCGUCGU--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 188249 0.74 0.741948
Target:  5'- aCCGGCggCG---GCGGCGGUAGCGGCg -3'
miRNA:   3'- -GGUCGagGUucaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 117533 0.74 0.741948
Target:  5'- aUCuGCUCCAGGUugcCGuGCAGCAGCucgAGCc -3'
miRNA:   3'- -GGuCGAGGUUCAu--GC-CGUCGUUG---UCG- -5'
10711 3' -52.8 NC_002794.1 + 188774 0.74 0.741948
Target:  5'- aCAGC-CC-GGUGCaGCGGUAGCGGCc -3'
miRNA:   3'- gGUCGaGGuUCAUGcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 44032 0.74 0.741948
Target:  5'- aCCGucGCUCUccgcccccgGGGUccGCGGCAGCGACAGa -3'
miRNA:   3'- -GGU--CGAGG---------UUCA--UGCCGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 116110 0.74 0.751702
Target:  5'- uCgAGgUCgAGGUcgaguccgccGCGGCGGCGGCGGCg -3'
miRNA:   3'- -GgUCgAGgUUCA----------UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 153117 0.73 0.761349
Target:  5'- cUCGaCUUCGGGUuCGGUGGCGGCAGCg -3'
miRNA:   3'- -GGUcGAGGUUCAuGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 147110 0.73 0.767082
Target:  5'- cCCGGC-CCAAGgacgaagacgucgACGGCGGUucgaGACGGCc -3'
miRNA:   3'- -GGUCGaGGUUCa------------UGCCGUCG----UUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.