miRNA display CGI


Results 81 - 100 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 130442 0.72 0.807653
Target:  5'- uCCAgGCgUCCGuGUugGGCGGCGaggcgcugGCGGCu -3'
miRNA:   3'- -GGU-CG-AGGUuCAugCCGUCGU--------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 194130 0.72 0.807653
Target:  5'- aCGGCU--GAGgcaGCGGCcGCAGCAGCg -3'
miRNA:   3'- gGUCGAggUUCa--UGCCGuCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 106979 0.72 0.807653
Target:  5'- gCGGCggCC-GGcACGGCGGUGGCGGCg -3'
miRNA:   3'- gGUCGa-GGuUCaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 13486 0.72 0.816464
Target:  5'- cCCAGCgUCCGcuUGCGGCuGCAACccaacGCg -3'
miRNA:   3'- -GGUCG-AGGUucAUGCCGuCGUUGu----CG- -5'
10711 3' -52.8 NC_002794.1 + 193249 0.72 0.816464
Target:  5'- aCAGCcgaccgaacugUCCGA--GCaGCAGCAACAGCg -3'
miRNA:   3'- gGUCG-----------AGGUUcaUGcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 142870 0.72 0.825105
Target:  5'- aCAGCUUCGGGUuguagagaaaGCGGCAgGCGugccCGGCg -3'
miRNA:   3'- gGUCGAGGUUCA----------UGCCGU-CGUu---GUCG- -5'
10711 3' -52.8 NC_002794.1 + 192858 0.72 0.825105
Target:  5'- cCCAGCacgaaCCA---GCGGCAGC-ACAGCc -3'
miRNA:   3'- -GGUCGa----GGUucaUGCCGUCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 37425 0.72 0.825105
Target:  5'- uCCAGCgCCGu---CcGCAGCAGCAGCa -3'
miRNA:   3'- -GGUCGaGGUucauGcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 13790 0.72 0.831048
Target:  5'- -uGGCUCCGgccgucuucgcgacGGgcccggcCGGCGGCGACGGCc -3'
miRNA:   3'- ggUCGAGGU--------------UCau-----GCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 49050 0.72 0.841844
Target:  5'- gUCAGCgUCCAGG-GCGcGCAGCAcgacucGCGGUa -3'
miRNA:   3'- -GGUCG-AGGUUCaUGC-CGUCGU------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 64830 0.72 0.841844
Target:  5'- gCCGGCgCCGAcgaccggACGGC-GCGGCGGCa -3'
miRNA:   3'- -GGUCGaGGUUca-----UGCCGuCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 194798 0.72 0.841844
Target:  5'- nCGGCUCCcAGUGCcccaccagccGCAGCGACGcGCg -3'
miRNA:   3'- gGUCGAGGuUCAUGc---------CGUCGUUGU-CG- -5'
10711 3' -52.8 NC_002794.1 + 22891 0.72 0.841844
Target:  5'- cCUGGcCUCCcguuGGUggACGGCGGCGACcGCg -3'
miRNA:   3'- -GGUC-GAGGu---UCA--UGCCGUCGUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 53572 0.71 0.849127
Target:  5'- gCCAGCUCCGAcagaaacaccGUGuCGGCgucGGCGucaccgggccgccGCAGCg -3'
miRNA:   3'- -GGUCGAGGUU----------CAU-GCCG---UCGU-------------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 48038 0.71 0.849926
Target:  5'- gCCGGacgCCGAGUGCGuGCugGGC-ACGGCg -3'
miRNA:   3'- -GGUCga-GGUUCAUGC-CG--UCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 125563 0.71 0.849926
Target:  5'- uUCGGCgacgCCAAGga-GGagAGCGACAGCg -3'
miRNA:   3'- -GGUCGa---GGUUCaugCCg-UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 43345 0.71 0.849926
Target:  5'- gCCGGUugaagUCCGAGUGCGGCucgGACAGg -3'
miRNA:   3'- -GGUCG-----AGGUUCAUGCCGucgUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 150842 0.71 0.849926
Target:  5'- gUCAGCUCCA---GCGGCGGCcGCGu- -3'
miRNA:   3'- -GGUCGAGGUucaUGCCGUCGuUGUcg -5'
10711 3' -52.8 NC_002794.1 + 103797 0.71 0.857808
Target:  5'- -gAGCUUgAGGUGCGcCuGCGACGGCg -3'
miRNA:   3'- ggUCGAGgUUCAUGCcGuCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 93832 0.71 0.857808
Target:  5'- gCGGCcaucgCCGAGaucauggACGGCcGCGGCGGCg -3'
miRNA:   3'- gGUCGa----GGUUCa------UGCCGuCGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.