miRNA display CGI


Results 101 - 120 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 103797 0.71 0.857808
Target:  5'- -gAGCUUgAGGUGCGcCuGCGACGGCg -3'
miRNA:   3'- ggUCGAGgUUCAUGCcGuCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 12204 0.71 0.865483
Target:  5'- gCC-GCUCgGAcGUGcCGGCGGCGucgGCGGCg -3'
miRNA:   3'- -GGuCGAGgUU-CAU-GCCGUCGU---UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 120062 0.71 0.865483
Target:  5'- gCGGCcgCgGAGgccgacGCGGCGGUGGCGGCg -3'
miRNA:   3'- gGUCGa-GgUUCa-----UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 100092 0.71 0.865483
Target:  5'- uCCAcgUCCGcGUGCGGCGcguGCAGCGGUg -3'
miRNA:   3'- -GGUcgAGGUuCAUGCCGU---CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 113701 0.71 0.865483
Target:  5'- gCAGCgCCAGGUucuggcucagggACGGCgucGGCGACuGCa -3'
miRNA:   3'- gGUCGaGGUUCA------------UGCCG---UCGUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 193065 0.71 0.880185
Target:  5'- aCCGGCUgCGGGccgucGCGGgaCAGCcGCAGCa -3'
miRNA:   3'- -GGUCGAgGUUCa----UGCC--GUCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 115744 0.71 0.880185
Target:  5'- cCCuGgaUCAGGUACGGC-GCGAuCGGCg -3'
miRNA:   3'- -GGuCgaGGUUCAUGCCGuCGUU-GUCG- -5'
10711 3' -52.8 NC_002794.1 + 119755 0.71 0.880185
Target:  5'- gCAGCUCCGgaccaGGUcGCGGCcGGCcuccaGGCGGCu -3'
miRNA:   3'- gGUCGAGGU-----UCA-UGCCG-UCG-----UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 127341 0.71 0.880185
Target:  5'- gCC-GCUgCCGAG-ACGcucGCGGCGGCGGCg -3'
miRNA:   3'- -GGuCGA-GGUUCaUGC---CGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 183130 0.71 0.880185
Target:  5'- gCGGCUCCc-GUACGcGCAGCuccGCGGa -3'
miRNA:   3'- gGUCGAGGuuCAUGC-CGUCGu--UGUCg -5'
10711 3' -52.8 NC_002794.1 + 113610 0.71 0.880185
Target:  5'- uCCAGCgccgcggCCAGGUucaGGUugaacgucucgAGCAGCGGCc -3'
miRNA:   3'- -GGUCGa------GGUUCAug-CCG-----------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 13278 0.71 0.880185
Target:  5'- gCGGCcgCUGuugACGGCGGCAugGGCg -3'
miRNA:   3'- gGUCGa-GGUucaUGCCGUCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 92958 0.71 0.887203
Target:  5'- aCCGGC-CCAucccGcGCGGCGGCAAggggcugcccguCAGCg -3'
miRNA:   3'- -GGUCGaGGUu---CaUGCCGUCGUU------------GUCG- -5'
10711 3' -52.8 NC_002794.1 + 8292 0.71 0.887203
Target:  5'- uCCAGCUCCGAcgaggAgGGCGaaGGCGGCa -3'
miRNA:   3'- -GGUCGAGGUUca---UgCCGUcgUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 56139 0.71 0.887203
Target:  5'- gCAGCgugucGUACGGCGugccGCAGCGGCa -3'
miRNA:   3'- gGUCGagguuCAUGCCGU----CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 30218 0.7 0.893992
Target:  5'- aCguGUUCCGuucGUACGGCAGCcGCAu- -3'
miRNA:   3'- -GguCGAGGUu--CAUGCCGUCGuUGUcg -5'
10711 3' -52.8 NC_002794.1 + 114168 0.7 0.893992
Target:  5'- gCC-GCUCCAAGaGCugguuggccaGGC-GCAGCGGCg -3'
miRNA:   3'- -GGuCGAGGUUCaUG----------CCGuCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 555 0.7 0.893992
Target:  5'- cCCGGC-CUcGGcGCGGCGGUGGCAGg -3'
miRNA:   3'- -GGUCGaGGuUCaUGCCGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 112305 0.7 0.893992
Target:  5'- cCCGGgUCCGAcuuCGGCGcCGACGGCg -3'
miRNA:   3'- -GGUCgAGGUUcauGCCGUcGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 195094 0.7 0.893992
Target:  5'- cCCAGCagCAgaaAGUACGGCGucucguGCGcccGCGGCg -3'
miRNA:   3'- -GGUCGagGU---UCAUGCCGU------CGU---UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.