miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 31773 0.66 0.984203
Target:  5'- aUguGCUCCGGGgucaGCGGUAGCccGAacucgauguacuuCAGCa -3'
miRNA:   3'- -GguCGAGGUUCa---UGCCGUCG--UU-------------GUCG- -5'
10711 3' -52.8 NC_002794.1 + 12518 0.66 0.983832
Target:  5'- aCCGGCggCUggGUggauuggaaggaacGCGGCGcGC-ACGGCu -3'
miRNA:   3'- -GGUCGa-GGuuCA--------------UGCCGU-CGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 195621 0.66 0.982482
Target:  5'- uCCGGC-CCAA--ACGGCcGGCGACgacgAGCc -3'
miRNA:   3'- -GGUCGaGGUUcaUGCCG-UCGUUG----UCG- -5'
10711 3' -52.8 NC_002794.1 + 14480 0.66 0.982482
Target:  5'- gCCGcGCUCgcuGUucGCGGCGGCGgcccgcgcucGCGGCg -3'
miRNA:   3'- -GGU-CGAGguuCA--UGCCGUCGU----------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 113280 0.66 0.982482
Target:  5'- gCCAGCUCCcgcGUcugcuCGGC-GCAGC-GCu -3'
miRNA:   3'- -GGUCGAGGuu-CAu----GCCGuCGUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 19778 0.66 0.982482
Target:  5'- aCCAGCUCCGGGUGCuccugacGCuGCuccgcucgGACcGCg -3'
miRNA:   3'- -GGUCGAGGUUCAUGc------CGuCG--------UUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 44351 0.66 0.982482
Target:  5'- gCCGGCgagaCCGAGagcGCGGCGggcGCGACGuccGCg -3'
miRNA:   3'- -GGUCGa---GGUUCa--UGCCGU---CGUUGU---CG- -5'
10711 3' -52.8 NC_002794.1 + 52573 0.66 0.982482
Target:  5'- aCCGGCgCCucAGaGCcGCAGCAcGCAGCc -3'
miRNA:   3'- -GGUCGaGGu-UCaUGcCGUCGU-UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 84283 0.66 0.982482
Target:  5'- gCAGCUgCCGAcg--GGgAGCGGCGGCg -3'
miRNA:   3'- gGUCGA-GGUUcaugCCgUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 91194 0.66 0.982482
Target:  5'- cCCGGCgacgCUGuucgcggACGGCGacGCGACGGCg -3'
miRNA:   3'- -GGUCGa---GGUuca----UGCCGU--CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 138748 0.66 0.982482
Target:  5'- cCCGGCccuccgggggCCGAGUcGCGGCGGU--CGGUg -3'
miRNA:   3'- -GGUCGa---------GGUUCA-UGCCGUCGuuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 136328 0.66 0.982482
Target:  5'- gCAGCUCUucu--CGGUGGCGGgcCAGCg -3'
miRNA:   3'- gGUCGAGGuucauGCCGUCGUU--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 105284 0.66 0.982482
Target:  5'- gCCAGCguugCuCGGGguccCGGCucAGCAGCAGg -3'
miRNA:   3'- -GGUCGa---G-GUUCau--GCCG--UCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 93639 0.66 0.982283
Target:  5'- gCAGCcugaacgugaacUCCAuGGgggGCGGCGauuaccgcuacauGCGACAGCg -3'
miRNA:   3'- gGUCG------------AGGU-UCa--UGCCGU-------------CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 42630 0.66 0.982283
Target:  5'- aCCGcGCUCUcacagcgGAGUcGCGGCcgaAGCcGACGGCg -3'
miRNA:   3'- -GGU-CGAGG-------UUCA-UGCCG---UCG-UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 75610 0.67 0.981259
Target:  5'- aCGGCUCCGugaucccggucuGGUacccuuucucgcuacACacgaGCGGCAGCGGCg -3'
miRNA:   3'- gGUCGAGGU------------UCA---------------UGc---CGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 31023 0.67 0.981259
Target:  5'- gCCucCUCCGAGcacagggccgacagaUAgGGCAGCGgcACGGCg -3'
miRNA:   3'- -GGucGAGGUUC---------------AUgCCGUCGU--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 38628 0.67 0.980409
Target:  5'- cCCGaCUCgCcGGUGCGGC-GCGACGGa -3'
miRNA:   3'- -GGUcGAG-GuUCAUGCCGuCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 155909 0.67 0.980409
Target:  5'- aCCGGCUCgAcGUGCGG-AGcCGGguGCu -3'
miRNA:   3'- -GGUCGAGgUuCAUGCCgUC-GUUguCG- -5'
10711 3' -52.8 NC_002794.1 + 184221 0.67 0.980409
Target:  5'- aCCAGCUCCcggcccAGUuccCGGCccaGGCucCGGCc -3'
miRNA:   3'- -GGUCGAGGu-----UCAu--GCCG---UCGuuGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.