miRNA display CGI


Results 61 - 80 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 45571 0.67 0.980409
Target:  5'- -gGGCUCguAGaagAUgGGCGGCAGCAGg -3'
miRNA:   3'- ggUCGAGguUCa--UG-CCGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 126611 0.67 0.980409
Target:  5'- gCCGGCgCCGAcGUcGCGGCGugagcGCGACcgGGCg -3'
miRNA:   3'- -GGUCGaGGUU-CA-UGCCGU-----CGUUG--UCG- -5'
10711 3' -52.8 NC_002794.1 + 56352 0.67 0.980409
Target:  5'- gCAGCUCgAAGa--GGCGGuCGACGuGCu -3'
miRNA:   3'- gGUCGAGgUUCaugCCGUC-GUUGU-CG- -5'
10711 3' -52.8 NC_002794.1 + 184221 0.67 0.980409
Target:  5'- aCCAGCUCCcggcccAGUuccCGGCccaGGCucCGGCc -3'
miRNA:   3'- -GGUCGAGGu-----UCAu--GCCG---UCGuuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 155909 0.67 0.980409
Target:  5'- aCCGGCUCgAcGUGCGG-AGcCGGguGCu -3'
miRNA:   3'- -GGUCGAGgUuCAUGCCgUC-GUUguCG- -5'
10711 3' -52.8 NC_002794.1 + 38628 0.67 0.980409
Target:  5'- cCCGaCUCgCcGGUGCGGC-GCGACGGa -3'
miRNA:   3'- -GGUcGAG-GuUCAUGCCGuCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 150716 0.67 0.980409
Target:  5'- aUCGaCUUCGAcGUGCGGCGGCuGACcGCg -3'
miRNA:   3'- -GGUcGAGGUU-CAUGCCGUCG-UUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 127166 0.67 0.980192
Target:  5'- aCCAcCUCCAcccucgccgcAGUcgucgccGCGGCcgcagccgcAGCAGCAGCc -3'
miRNA:   3'- -GGUcGAGGU----------UCA-------UGCCG---------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 14653 0.67 0.978852
Target:  5'- gCCGGCgccgcggcgucggUCCGAcucGCGGCGGCGgucgcgcugcuccugACGGCg -3'
miRNA:   3'- -GGUCG-------------AGGUUca-UGCCGUCGU---------------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 25147 0.67 0.978158
Target:  5'- aCGGUaggCCAGcGUGauaGGCAGCcaGGCAGCc -3'
miRNA:   3'- gGUCGa--GGUU-CAUg--CCGUCG--UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 54701 0.67 0.978158
Target:  5'- aCAGaaaCUCCAGGUACGaGCcGCGGauguugacguuCAGCg -3'
miRNA:   3'- gGUC---GAGGUUCAUGC-CGuCGUU-----------GUCG- -5'
10711 3' -52.8 NC_002794.1 + 14257 0.67 0.978158
Target:  5'- gCCGGCUcgaccccgaCCGAGguguuCGGCuggAGCGuCAGCg -3'
miRNA:   3'- -GGUCGA---------GGUUCau---GCCG---UCGUuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 94139 0.67 0.978158
Target:  5'- -aAGgUCCGAccGCGGCGGCGcuggACGGUg -3'
miRNA:   3'- ggUCgAGGUUcaUGCCGUCGU----UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 66575 0.67 0.978158
Target:  5'- gCCGGCgCCG---GCGGCAGCcccGAguGCu -3'
miRNA:   3'- -GGUCGaGGUucaUGCCGUCG---UUguCG- -5'
10711 3' -52.8 NC_002794.1 + 108440 0.67 0.978158
Target:  5'- aCCGGCggCAcucGCGGCGGCGGCccgccGGCa -3'
miRNA:   3'- -GGUCGagGUucaUGCCGUCGUUG-----UCG- -5'
10711 3' -52.8 NC_002794.1 + 183689 0.67 0.978158
Target:  5'- uCgAGCgcccgCCGcGcGCGGCGGC-ACAGCc -3'
miRNA:   3'- -GgUCGa----GGUuCaUGCCGUCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 190736 0.67 0.978158
Target:  5'- gCAGCgcccgccgCCGucucgACGGgGGCGGCGGCc -3'
miRNA:   3'- gGUCGa-------GGUuca--UGCCgUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 188341 0.67 0.978158
Target:  5'- gCCGGCggcgCCGucgcgcccGUcCGGcCGGCGGCGGCc -3'
miRNA:   3'- -GGUCGa---GGUu-------CAuGCC-GUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 115393 0.67 0.978158
Target:  5'- gCCGGC-CCGuGcUGCGGacucCAGUGGCGGCa -3'
miRNA:   3'- -GGUCGaGGUuC-AUGCC----GUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 44216 0.67 0.977923
Target:  5'- uCCGGCUCgGgcgccgagggcucGGUGCcgGGCGGCucggugccgGGCGGCu -3'
miRNA:   3'- -GGUCGAGgU-------------UCAUG--CCGUCG---------UUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.