miRNA display CGI


Results 101 - 120 of 314 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 125743 0.67 0.967225
Target:  5'- -aGGCgggCCGcgGG-ACGGCGGcCGGCGGCu -3'
miRNA:   3'- ggUCGa--GGU--UCaUGCCGUC-GUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 54008 0.67 0.967225
Target:  5'- gCAGCUCCcgcAGcACGGCcgccuucuugGGCGuCAGCu -3'
miRNA:   3'- gGUCGAGGu--UCaUGCCG----------UCGUuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 87324 0.67 0.967225
Target:  5'- cCCAGgUCCA---GCGGCGGCA--GGUu -3'
miRNA:   3'- -GGUCgAGGUucaUGCCGUCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 177177 0.67 0.967225
Target:  5'- -gAGacgCCGAGUACGaacGUGGCAACGGUa -3'
miRNA:   3'- ggUCga-GGUUCAUGC---CGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 183376 0.68 0.965301
Target:  5'- cCCGGCcgugccccgucccgCCGA--GCuGCAGCAACAGCc -3'
miRNA:   3'- -GGUCGa-------------GGUUcaUGcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 48205 0.68 0.963976
Target:  5'- gCCGGcCUUCGAGguagaGGCAGagcaGGCGGCc -3'
miRNA:   3'- -GGUC-GAGGUUCaug--CCGUCg---UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 44073 0.68 0.963976
Target:  5'- gCC-GCUCguGGUGacauaccgGGCAGUAACGGUg -3'
miRNA:   3'- -GGuCGAGguUCAUg-------CCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 63071 0.68 0.963976
Target:  5'- gCgAGCUCCuGGgcCGGCuGUAcuuCAGCg -3'
miRNA:   3'- -GgUCGAGGuUCauGCCGuCGUu--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 114209 0.68 0.963976
Target:  5'- gCCGGCgucUCCG---GCGGCAGCcagccgauCAGCg -3'
miRNA:   3'- -GGUCG---AGGUucaUGCCGUCGuu------GUCG- -5'
10711 3' -52.8 NC_002794.1 + 142369 0.68 0.963976
Target:  5'- gCGGCggaggCgGAGggaGCGGCGGaGACGGCg -3'
miRNA:   3'- gGUCGa----GgUUCa--UGCCGUCgUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 32905 0.68 0.963976
Target:  5'- gCGGaaCCAGucggGCGGCAGCAGguCGGCg -3'
miRNA:   3'- gGUCgaGGUUca--UGCCGUCGUU--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 32157 0.68 0.963976
Target:  5'- aCAGCUCCGA--GCGGUGGCccGCcuGGCc -3'
miRNA:   3'- gGUCGAGGUUcaUGCCGUCGu-UG--UCG- -5'
10711 3' -52.8 NC_002794.1 + 179518 0.68 0.963976
Target:  5'- aCC-GCUgCCAGGUcuguuucgacgACGGCGGUAGCcccGCg -3'
miRNA:   3'- -GGuCGA-GGUUCA-----------UGCCGUCGUUGu--CG- -5'
10711 3' -52.8 NC_002794.1 + 46781 0.68 0.963976
Target:  5'- cCCAGCg------GCGGCGGCGACAaaaGCa -3'
miRNA:   3'- -GGUCGagguucaUGCCGUCGUUGU---CG- -5'
10711 3' -52.8 NC_002794.1 + 57399 0.68 0.961921
Target:  5'- aCCGGCUCCGgcgcccgcguggccgGcGUGCuGGuCGGC-ACGGCg -3'
miRNA:   3'- -GGUCGAGGU---------------U-CAUG-CC-GUCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 48930 0.68 0.960507
Target:  5'- gCCAGCgCCAGGcgcuCGGCGaccucuucGCAgACGGCg -3'
miRNA:   3'- -GGUCGaGGUUCau--GCCGU--------CGU-UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 184356 0.68 0.960507
Target:  5'- gCAGCUCgCA---GCGGCGcuccCAGCAGCg -3'
miRNA:   3'- gGUCGAG-GUucaUGCCGUc---GUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 108874 0.68 0.960507
Target:  5'- aCCGGgUCCAAcucggcGUGCGcGguGUacGACGGCg -3'
miRNA:   3'- -GGUCgAGGUU------CAUGC-CguCG--UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 13331 0.68 0.960507
Target:  5'- aCC-GCUCCcccGGU-CGGgGGUGGCGGCg -3'
miRNA:   3'- -GGuCGAGGu--UCAuGCCgUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 20759 0.68 0.960507
Target:  5'- gCCAGCUCUcGGaACGGC-GCG--AGCa -3'
miRNA:   3'- -GGUCGAGGuUCaUGCCGuCGUugUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.