miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 36643 0.67 0.976719
Target:  5'- gUCGGCUCCGgcagccgaucccgaaAGaguuUGCGcCAGUAGCAGCc -3'
miRNA:   3'- -GGUCGAGGU---------------UC----AUGCcGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 37425 0.72 0.825105
Target:  5'- uCCAGCgCCGu---CcGCAGCAGCAGCa -3'
miRNA:   3'- -GGUCGaGGUucauGcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 37738 0.73 0.79868
Target:  5'- gCGGCgCCGccgGCGGCGGCGcgGCGGCg -3'
miRNA:   3'- gGUCGaGGUucaUGCCGUCGU--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 37881 0.75 0.681707
Target:  5'- uCgGGCggCGGGggcggugGCGGCGGCAGCGGCu -3'
miRNA:   3'- -GgUCGagGUUCa------UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 37968 0.67 0.970262
Target:  5'- gCGGCUCguGGUACGaGCcgaucGCGGuCAGCc -3'
miRNA:   3'- gGUCGAGguUCAUGC-CGu----CGUU-GUCG- -5'
10711 3' -52.8 NC_002794.1 + 38628 0.67 0.980409
Target:  5'- cCCGaCUCgCcGGUGCGGC-GCGACGGa -3'
miRNA:   3'- -GGUcGAG-GuUCAUGCCGuCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 41277 0.77 0.548421
Target:  5'- --cGCUCCGAGaACGGCGGCGGCuccgacGCg -3'
miRNA:   3'- gguCGAGGUUCaUGCCGUCGUUGu-----CG- -5'
10711 3' -52.8 NC_002794.1 + 41488 0.75 0.702052
Target:  5'- aCAGCaggucggaCAAGUACGGCuuCAGCAGCu -3'
miRNA:   3'- gGUCGag------GUUCAUGCCGucGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 42230 0.7 0.906867
Target:  5'- aUCAGC-CgCGAG-ACGGCGGCGACGa- -3'
miRNA:   3'- -GGUCGaG-GUUCaUGCCGUCGUUGUcg -5'
10711 3' -52.8 NC_002794.1 + 42630 0.66 0.982283
Target:  5'- aCCGcGCUCUcacagcgGAGUcGCGGCcgaAGCcGACGGCg -3'
miRNA:   3'- -GGU-CGAGG-------UUCA-UGCCG---UCG-UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 43345 0.71 0.849926
Target:  5'- gCCGGUugaagUCCGAGUGCGGCucgGACAGg -3'
miRNA:   3'- -GGUCG-----AGGUUCAUGCCGucgUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 44032 0.74 0.741948
Target:  5'- aCCGucGCUCUccgcccccgGGGUccGCGGCAGCGACAGa -3'
miRNA:   3'- -GGU--CGAGG---------UUCA--UGCCGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 44073 0.68 0.963976
Target:  5'- gCC-GCUCguGGUGacauaccgGGCAGUAACGGUg -3'
miRNA:   3'- -GGuCGAGguUCAUg-------CCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 44216 0.67 0.977923
Target:  5'- uCCGGCUCgGgcgccgagggcucGGUGCcgGGCGGCucggugccgGGCGGCu -3'
miRNA:   3'- -GGUCGAGgU-------------UCAUG--CCGUCG---------UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 44351 0.66 0.982482
Target:  5'- gCCGGCgagaCCGAGagcGCGGCGggcGCGACGuccGCg -3'
miRNA:   3'- -GGUCGa---GGUUCa--UGCCGU---CGUUGU---CG- -5'
10711 3' -52.8 NC_002794.1 + 45571 0.67 0.980409
Target:  5'- -gGGCUCguAGaagAUgGGCGGCAGCAGg -3'
miRNA:   3'- ggUCGAGguUCa--UG-CCGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 45837 0.69 0.939721
Target:  5'- gCAGCUCCccgucGUAC-GCGGC-GCGGCu -3'
miRNA:   3'- gGUCGAGGuu---CAUGcCGUCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 46301 0.87 0.17764
Target:  5'- uCCGaacGUUCCGAGcGCGGCGGCGACGGCg -3'
miRNA:   3'- -GGU---CGAGGUUCaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 46781 0.68 0.963976
Target:  5'- cCCAGCg------GCGGCGGCGACAaaaGCa -3'
miRNA:   3'- -GGUCGagguucaUGCCGUCGUUGU---CG- -5'
10711 3' -52.8 NC_002794.1 + 47333 0.73 0.79868
Target:  5'- cCCGGCUCCc---GCGGCGGCGGCc-- -3'
miRNA:   3'- -GGUCGAGGuucaUGCCGUCGUUGucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.