miRNA display CGI


Results 81 - 100 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 55728 0.67 0.975467
Target:  5'- aCGGCgUUguGGUACGGCAccGCGagccacgucuucuGCAGCu -3'
miRNA:   3'- gGUCG-AGguUCAUGCCGU--CGU-------------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 56139 0.71 0.887203
Target:  5'- gCAGCgugucGUACGGCGugccGCAGCGGCa -3'
miRNA:   3'- gGUCGagguuCAUGCCGU----CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 56352 0.67 0.980409
Target:  5'- gCAGCUCgAAGa--GGCGGuCGACGuGCu -3'
miRNA:   3'- gGUCGAGgUUCaugCCGUC-GUUGU-CG- -5'
10711 3' -52.8 NC_002794.1 + 57310 0.66 0.987718
Target:  5'- aCC-GCgaccCCGAGUACcuGCAGCGcguccugcuGCAGCu -3'
miRNA:   3'- -GGuCGa---GGUUCAUGc-CGUCGU---------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 57399 0.68 0.961921
Target:  5'- aCCGGCUCCGgcgcccgcguggccgGcGUGCuGGuCGGC-ACGGCg -3'
miRNA:   3'- -GGUCGAGGU---------------U-CAUG-CC-GUCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 58062 0.66 0.984386
Target:  5'- gCGGCcCCG---GCGGCGGCGggacggGCGGCc -3'
miRNA:   3'- gGUCGaGGUucaUGCCGUCGU------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 59896 0.66 0.989163
Target:  5'- aCCuGCgCCGcGUGC-GCAGCGACAuggGCg -3'
miRNA:   3'- -GGuCGaGGUuCAUGcCGUCGUUGU---CG- -5'
10711 3' -52.8 NC_002794.1 + 60581 0.74 0.736049
Target:  5'- -gAGCUCCAcgccgggccugcuggAGgcGCaGCAGCAACAGCa -3'
miRNA:   3'- ggUCGAGGU---------------UCa-UGcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 60870 0.66 0.987718
Target:  5'- gCCGGCUCuCAAGUAcauCGGC-GCcgUGGUc -3'
miRNA:   3'- -GGUCGAG-GUUCAU---GCCGuCGuuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 61891 0.66 0.986129
Target:  5'- gCCGcGCggCGAGcGCGGCgAGC-GCAGCg -3'
miRNA:   3'- -GGU-CGagGUUCaUGCCG-UCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 62066 0.67 0.980409
Target:  5'- gCCGGCggcgacgCCG---GCGGCGaCGACGGCg -3'
miRNA:   3'- -GGUCGa------GGUucaUGCCGUcGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 62909 0.74 0.729124
Target:  5'- aCCAGCUCCGcGUguaccguaagcacuACGGCcgcuGCGugGGCu -3'
miRNA:   3'- -GGUCGAGGUuCA--------------UGCCGu---CGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 63071 0.68 0.963976
Target:  5'- gCgAGCUCCuGGgcCGGCuGUAcuuCAGCg -3'
miRNA:   3'- -GgUCGAGGuUCauGCCGuCGUu--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 64033 0.67 0.970262
Target:  5'- -gAGCUCCAGuggACGGCGaaacGCGAC-GCg -3'
miRNA:   3'- ggUCGAGGUUca-UGCCGU----CGUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 64792 0.68 0.956814
Target:  5'- gCCGGUUCC----GCGGCgAGCGACGccGCg -3'
miRNA:   3'- -GGUCGAGGuucaUGCCG-UCGUUGU--CG- -5'
10711 3' -52.8 NC_002794.1 + 64830 0.72 0.841844
Target:  5'- gCCGGCgCCGAcgaccggACGGC-GCGGCGGCa -3'
miRNA:   3'- -GGUCGaGGUUca-----UGCCGuCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 64990 0.7 0.918788
Target:  5'- cCCAGCUgCAcugGCGGCAGUGGaaccuCAGCc -3'
miRNA:   3'- -GGUCGAgGUucaUGCCGUCGUU-----GUCG- -5'
10711 3' -52.8 NC_002794.1 + 66026 0.68 0.956814
Target:  5'- gCGGUcgucgCCGucgucgucGGgcCGGCAGCGGCGGCc -3'
miRNA:   3'- gGUCGa----GGU--------UCauGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 66575 0.67 0.978158
Target:  5'- gCCGGCgCCG---GCGGCAGCcccGAguGCu -3'
miRNA:   3'- -GGUCGaGGUucaUGCCGUCG---UUguCG- -5'
10711 3' -52.8 NC_002794.1 + 66722 0.7 0.900547
Target:  5'- aCGGCcgccgCCAccgccgGCGGUGGCGGCGGCg -3'
miRNA:   3'- gGUCGa----GGUuca---UGCCGUCGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.