miRNA display CGI


Results 101 - 120 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 67008 0.75 0.671468
Target:  5'- aCAGa--CGAGUcCGGCGGCGGCGGCc -3'
miRNA:   3'- gGUCgagGUUCAuGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 67398 0.66 0.987718
Target:  5'- gCCAGCgucggcgCCAGcGU-CGGCgccAGCGucgGCGGCg -3'
miRNA:   3'- -GGUCGa------GGUU-CAuGCCG---UCGU---UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 67920 0.69 0.924385
Target:  5'- cCCGGCUcuccCCGAGcgACGG-GGCGAUGGCc -3'
miRNA:   3'- -GGUCGA----GGUUCa-UGCCgUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 68549 0.66 0.984386
Target:  5'- gCGGCcgaCAAGcUGCGGguGUcgccGACGGCg -3'
miRNA:   3'- gGUCGag-GUUC-AUGCCguCG----UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 70240 0.66 0.989163
Target:  5'- gCCGGCcgccCCGcAGcagACGcGCAGCGACGGa -3'
miRNA:   3'- -GGUCGa---GGU-UCa--UGC-CGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 70859 0.86 0.206595
Target:  5'- gCCGGcCUCCuccgGCGGCGGCAGCGGCg -3'
miRNA:   3'- -GGUC-GAGGuucaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 71357 0.69 0.934852
Target:  5'- gCGGCgcagCAGGUGCGGCAGCcgcccCAGg -3'
miRNA:   3'- gGUCGag--GUUCAUGCCGUCGuu---GUCg -5'
10711 3' -52.8 NC_002794.1 + 71578 0.66 0.987718
Target:  5'- uCCGGUacacgcgcuUCCAc-UGCGGCugGGCgAACAGCa -3'
miRNA:   3'- -GGUCG---------AGGUucAUGCCG--UCG-UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 71946 0.67 0.973092
Target:  5'- gCAGCUCCucgccgacGUAcCGGC-GCAuCAGCc -3'
miRNA:   3'- gGUCGAGGuu------CAU-GCCGuCGUuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 75115 0.67 0.970262
Target:  5'- aCCAGgUcgucuuggaagCCGAugaucGUAC-GCAGCAACAGCa -3'
miRNA:   3'- -GGUCgA-----------GGUU-----CAUGcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 75350 0.68 0.952893
Target:  5'- aCCGGCgacgguucgCCAccgacccgccgcGGc-CGGCGGCGGCGGCc -3'
miRNA:   3'- -GGUCGa--------GGU------------UCauGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 75610 0.67 0.981259
Target:  5'- aCGGCUCCGugaucccggucuGGUacccuuucucgcuacACacgaGCGGCAGCGGCg -3'
miRNA:   3'- gGUCGAGGU------------UCA---------------UGc---CGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 78363 0.78 0.498915
Target:  5'- gCAGCUCCAAc-ACGGCcugcuccgccAGCGACGGCg -3'
miRNA:   3'- gGUCGAGGUUcaUGCCG----------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 79411 0.75 0.661196
Target:  5'- cCCuGUUcgacaagaCCAAGggcccgGCGGCGGCGGCGGCg -3'
miRNA:   3'- -GGuCGA--------GGUUCa-----UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 82011 0.73 0.795958
Target:  5'- gCCGGCcgcugacgCCGAaacccgacgaucgcGUggGCGGCGGCGGCGGCg -3'
miRNA:   3'- -GGUCGa-------GGUU--------------CA--UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 84283 0.66 0.982482
Target:  5'- gCAGCUgCCGAcg--GGgAGCGGCGGCg -3'
miRNA:   3'- gGUCGA-GGUUcaugCCgUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 85282 0.66 0.987718
Target:  5'- cUCGGCUCC-GGUcaGCGGCugagacgaGGCGACGa- -3'
miRNA:   3'- -GGUCGAGGuUCA--UGCCG--------UCGUUGUcg -5'
10711 3' -52.8 NC_002794.1 + 87044 0.73 0.780285
Target:  5'- aCCGGCgcggcucggggCCGGGUcCuGUAGCGACAGCa -3'
miRNA:   3'- -GGUCGa----------GGUUCAuGcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 87324 0.67 0.967225
Target:  5'- cCCAGgUCCA---GCGGCGGCA--GGUu -3'
miRNA:   3'- -GGUCgAGGUucaUGCCGUCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 87348 0.81 0.372859
Target:  5'- cCCAGCagCGGGUcCGGCGGCgAGCGGCg -3'
miRNA:   3'- -GGUCGagGUUCAuGCCGUCG-UUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.