miRNA display CGI


Results 121 - 140 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 88112 0.66 0.986129
Target:  5'- uCCGGCaUCCAaucAGcacACGGCAGCuu--GCg -3'
miRNA:   3'- -GGUCG-AGGU---UCa--UGCCGUCGuuguCG- -5'
10711 3' -52.8 NC_002794.1 + 91194 0.66 0.982482
Target:  5'- cCCGGCgacgCUGuucgcggACGGCGacGCGACGGCg -3'
miRNA:   3'- -GGUCGa---GGUuca----UGCCGU--CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 91737 0.66 0.989163
Target:  5'- cUCGGCggCCAacaaGGUGcCGGCgGGCGGCAccGCg -3'
miRNA:   3'- -GGUCGa-GGU----UCAU-GCCG-UCGUUGU--CG- -5'
10711 3' -52.8 NC_002794.1 + 91868 0.73 0.77088
Target:  5'- -gGGUcCCGGGggUGGCGGCGGCGGCc -3'
miRNA:   3'- ggUCGaGGUUCauGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 92232 0.76 0.59936
Target:  5'- gCCGGCgacgCCAAGgagcccucgGCGGCgucgcuGGCGGCGGCg -3'
miRNA:   3'- -GGUCGa---GGUUCa--------UGCCG------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 92808 0.66 0.986129
Target:  5'- aCCaaGGCgCCAAGU---GCAGCAAgAGCg -3'
miRNA:   3'- -GG--UCGaGGUUCAugcCGUCGUUgUCG- -5'
10711 3' -52.8 NC_002794.1 + 92958 0.71 0.887203
Target:  5'- aCCGGC-CCAucccGcGCGGCGGCAAggggcugcccguCAGCg -3'
miRNA:   3'- -GGUCGaGGUu---CaUGCCGUCGUU------------GUCG- -5'
10711 3' -52.8 NC_002794.1 + 93639 0.66 0.982283
Target:  5'- gCAGCcugaacgugaacUCCAuGGgggGCGGCGauuaccgcuacauGCGACAGCg -3'
miRNA:   3'- gGUCG------------AGGU-UCa--UGCCGU-------------CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 93832 0.71 0.857808
Target:  5'- gCGGCcaucgCCGAGaucauggACGGCcGCGGCGGCg -3'
miRNA:   3'- gGUCGa----GGUUCa------UGCCGuCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 94033 0.79 0.451498
Target:  5'- gCCGGCgggcCCGAGaGCGGCGGCGgugcggggGCGGCg -3'
miRNA:   3'- -GGUCGa---GGUUCaUGCCGUCGU--------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 94139 0.67 0.978158
Target:  5'- -aAGgUCCGAccGCGGCGGCGcuggACGGUg -3'
miRNA:   3'- ggUCgAGGUUcaUGCCGUCGU----UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 94448 0.73 0.780285
Target:  5'- aCGGCgCgGAGgaguCGGUGGCGACGGCa -3'
miRNA:   3'- gGUCGaGgUUCau--GCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 95752 0.69 0.924385
Target:  5'- gCUGGUacUCgCGGGgcgGCGGCcGCGACGGCg -3'
miRNA:   3'- -GGUCG--AG-GUUCa--UGCCGuCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 95823 0.83 0.297049
Target:  5'- gCGGCggCCGGGggaGCGGCGGCGGCGGCc -3'
miRNA:   3'- gGUCGa-GGUUCa--UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 100092 0.71 0.865483
Target:  5'- uCCAcgUCCGcGUGCGGCGcguGCAGCGGUg -3'
miRNA:   3'- -GGUcgAGGUuCAUGCCGU---CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 101272 0.69 0.94435
Target:  5'- cCCGGCgCCGG---UGGCGGCGGCGGg -3'
miRNA:   3'- -GGUCGaGGUUcauGCCGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 101493 0.66 0.986129
Target:  5'- gCCGGCggCCGguccgagcGGUGCGGCA-CAcgcCGGCg -3'
miRNA:   3'- -GGUCGa-GGU--------UCAUGCCGUcGUu--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 101568 0.66 0.986129
Target:  5'- gCCGGCgg-GAGUGcCGGCcGCcGCGGCc -3'
miRNA:   3'- -GGUCGaggUUCAU-GCCGuCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 101786 0.67 0.975467
Target:  5'- uCCuG-UCCGAGUGCugcgccgcugguuGGC-GCAGCGGCg -3'
miRNA:   3'- -GGuCgAGGUUCAUG-------------CCGuCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 103588 0.75 0.691905
Target:  5'- gCAGCggUCGGGca-GGCAGCGGCGGCa -3'
miRNA:   3'- gGUCGa-GGUUCaugCCGUCGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.