miRNA display CGI


Results 61 - 80 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 177177 0.67 0.967225
Target:  5'- -gAGacgCCGAGUACGaacGUGGCAACGGUa -3'
miRNA:   3'- ggUCga-GGUUCAUGC---CGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 176961 0.66 0.984386
Target:  5'- gCAGCgggaccUCCGGGUAuccCGGgAGUAcCAGCg -3'
miRNA:   3'- gGUCG------AGGUUCAU---GCCgUCGUuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 166992 0.66 0.989163
Target:  5'- uCCAGUUCCGgacAGccaACGGUuccuGGUuACAGCg -3'
miRNA:   3'- -GGUCGAGGU---UCa--UGCCG----UCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 155909 0.67 0.980409
Target:  5'- aCCGGCUCgAcGUGCGG-AGcCGGguGCu -3'
miRNA:   3'- -GGUCGAGgUuCAUGCCgUC-GUUguCG- -5'
10711 3' -52.8 NC_002794.1 + 154960 0.7 0.900547
Target:  5'- -aGGCgaCgAAGUGCGGCagggucGGUAGCAGCg -3'
miRNA:   3'- ggUCGa-GgUUCAUGCCG------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 154361 0.75 0.681707
Target:  5'- cCCGcGCggUCCAGGccGCGGCGGCGGCGGg -3'
miRNA:   3'- -GGU-CG--AGGUUCa-UGCCGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 153117 0.73 0.761349
Target:  5'- cUCGaCUUCGGGUuCGGUGGCGGCAGCg -3'
miRNA:   3'- -GGUcGAGGUUCAuGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 152557 0.66 0.984386
Target:  5'- -gAGUgCCAGGaGCGGCGcuucaccgccGCGGCGGCc -3'
miRNA:   3'- ggUCGaGGUUCaUGCCGU----------CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 151918 0.66 0.986129
Target:  5'- gCCgAGCUCCGucUGCGGC-GCA--AGCg -3'
miRNA:   3'- -GG-UCGAGGUucAUGCCGuCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 151214 0.66 0.984386
Target:  5'- gCCGGCUaCCGGGucUugGGCcagGGCuacCGGCu -3'
miRNA:   3'- -GGUCGA-GGUUC--AugCCG---UCGuu-GUCG- -5'
10711 3' -52.8 NC_002794.1 + 150842 0.71 0.849926
Target:  5'- gUCAGCUCCA---GCGGCGGCcGCGu- -3'
miRNA:   3'- -GGUCGAGGUucaUGCCGUCGuUGUcg -5'
10711 3' -52.8 NC_002794.1 + 150716 0.67 0.980409
Target:  5'- aUCGaCUUCGAcGUGCGGCGGCuGACcGCg -3'
miRNA:   3'- -GGUcGAGGUU-CAUGCCGUCG-UUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 150214 0.67 0.973092
Target:  5'- gCGGCUgcugCCGAGcUGCGuGCGaCGGCAGCu -3'
miRNA:   3'- gGUCGA----GGUUC-AUGC-CGUcGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 148631 0.7 0.900547
Target:  5'- -gGGuCUCCGAucGCGGCGGCGugcuCGGCu -3'
miRNA:   3'- ggUC-GAGGUUcaUGCCGUCGUu---GUCG- -5'
10711 3' -52.8 NC_002794.1 + 147960 0.77 0.589095
Target:  5'- cCgGGCUCCGAGcGCGuGCAGCGugugGCGGUg -3'
miRNA:   3'- -GgUCGAGGUUCaUGC-CGUCGU----UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 147683 0.69 0.934852
Target:  5'- --cGCUCgAGGaccCGGCGGCGauGCGGCg -3'
miRNA:   3'- gguCGAGgUUCau-GCCGUCGU--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 147110 0.73 0.767082
Target:  5'- cCCGGC-CCAAGgacgaagacgucgACGGCGGUucgaGACGGCc -3'
miRNA:   3'- -GGUCGaGGUUCa------------UGCCGUCG----UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 146987 0.74 0.712139
Target:  5'- gUCGGCgccgccggCCGAcGU-CGGCGGCGGCGGCc -3'
miRNA:   3'- -GGUCGa-------GGUU-CAuGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 145563 0.66 0.989163
Target:  5'- aCCGGUUCgcggaCGAGcgccgACGG-AGCGGCGGCc -3'
miRNA:   3'- -GGUCGAG-----GUUCa----UGCCgUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 144990 0.69 0.934852
Target:  5'- aCCGGCgCCGGGcguccgccUGGC-GCAGCAGCu -3'
miRNA:   3'- -GGUCGaGGUUCau------GCCGuCGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.