miRNA display CGI


Results 81 - 100 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 143287 0.73 0.789555
Target:  5'- gCC-GCUCgGGGUcggGCGGguGCAgcGCGGCg -3'
miRNA:   3'- -GGuCGAGgUUCA---UGCCguCGU--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 142870 0.72 0.825105
Target:  5'- aCAGCUUCGGGUuguagagaaaGCGGCAgGCGugccCGGCg -3'
miRNA:   3'- gGUCGAGGUUCA----------UGCCGU-CGUu---GUCG- -5'
10711 3' -52.8 NC_002794.1 + 142474 0.73 0.789555
Target:  5'- gCCGGCaCCGuggacgcGUGCGGCGcCGGCAGCg -3'
miRNA:   3'- -GGUCGaGGUu------CAUGCCGUcGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 142369 0.68 0.963976
Target:  5'- gCGGCggaggCgGAGggaGCGGCGGaGACGGCg -3'
miRNA:   3'- gGUCGa----GgUUCa--UGCCGUCgUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 142301 0.68 0.952489
Target:  5'- -aGGCgguaCAGGUggcggagGCGGCGGCGcagGCGGCg -3'
miRNA:   3'- ggUCGag--GUUCA-------UGCCGUCGU---UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 142195 0.75 0.6509
Target:  5'- gCGGCagUgCGGGaagcgGCGGCGGCAGCGGCg -3'
miRNA:   3'- gGUCG--AgGUUCa----UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 142128 0.75 0.6509
Target:  5'- cCCGGCggccgaccgCCGGGUcACGGCGGaGGCGGCg -3'
miRNA:   3'- -GGUCGa--------GGUUCA-UGCCGUCgUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 141356 0.68 0.952893
Target:  5'- gCAGCgaCGAGaGCGGCGGagagAACGGCg -3'
miRNA:   3'- gGUCGagGUUCaUGCCGUCg---UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 141133 0.7 0.912948
Target:  5'- cCCGGCUCCGAGUcgccgaagccgGCGGaucccGCGACGa- -3'
miRNA:   3'- -GGUCGAGGUUCA-----------UGCCgu---CGUUGUcg -5'
10711 3' -52.8 NC_002794.1 + 140086 0.73 0.780285
Target:  5'- gCCAGCaggacgUCCAuGGU-CGGCGGCGaucgACGGCg -3'
miRNA:   3'- -GGUCG------AGGU-UCAuGCCGUCGU----UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 139905 0.67 0.980409
Target:  5'- gCCAGC-CgCAGGccguCGGaCGGCAcGCAGCu -3'
miRNA:   3'- -GGUCGaG-GUUCau--GCC-GUCGU-UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 139712 0.69 0.929215
Target:  5'- cCCAGUUacgaggaUCAGGaACGGCAGCAcgccgACGGUc -3'
miRNA:   3'- -GGUCGA-------GGUUCaUGCCGUCGU-----UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 138748 0.66 0.982482
Target:  5'- cCCGGCccuccgggggCCGAGUcGCGGCGGU--CGGUg -3'
miRNA:   3'- -GGUCGa---------GGUUCA-UGCCGUCGuuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 138417 0.74 0.732097
Target:  5'- gCCGGCcgCCGAcucGUcgagccGCGGUGGCGGCGGCg -3'
miRNA:   3'- -GGUCGa-GGUU---CA------UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 138025 0.69 0.924385
Target:  5'- aCCAGUUCCGAGUcGUGGUcGCAGUAGUg -3'
miRNA:   3'- -GGUCGAGGUUCA-UGCCGuCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 136393 0.82 0.330355
Target:  5'- aCCGGCUCCGGGUcgcgcgugcgcugaACGGCgguccauaaccggAGCGGCGGCu -3'
miRNA:   3'- -GGUCGAGGUUCA--------------UGCCG-------------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 136328 0.66 0.982482
Target:  5'- gCAGCUCUucu--CGGUGGCGGgcCAGCg -3'
miRNA:   3'- gGUCGAGGuucauGCCGUCGUU--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 131009 0.7 0.918788
Target:  5'- cCUGGCUCaCGGGU-CGGUGGUcguGCGGCg -3'
miRNA:   3'- -GGUCGAG-GUUCAuGCCGUCGu--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 130442 0.72 0.807653
Target:  5'- uCCAgGCgUCCGuGUugGGCGGCGaggcgcugGCGGCu -3'
miRNA:   3'- -GGU-CG-AGGUuCAugCCGUCGU--------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 130310 0.69 0.943443
Target:  5'- aCGGCgagauguccuggCCGAG-ACGGCGGacgaaGGCGGCg -3'
miRNA:   3'- gGUCGa-----------GGUUCaUGCCGUCg----UUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.