miRNA display CGI


Results 101 - 120 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 130265 0.67 0.973092
Target:  5'- aCAGCUCgAAGaGCGGUugAGCcGCcGCu -3'
miRNA:   3'- gGUCGAGgUUCaUGCCG--UCGuUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 129928 0.77 0.568668
Target:  5'- gCCAGg-CCGuGgcgACGGCGGCGGCGGCg -3'
miRNA:   3'- -GGUCgaGGUuCa--UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 129187 0.69 0.934852
Target:  5'- aUCGGcCUCCGGGUcgACGaccgaGCGGCcGACGGCg -3'
miRNA:   3'- -GGUC-GAGGUUCA--UGC-----CGUCG-UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 127796 0.68 0.960507
Target:  5'- gCCGGCUCCGAGUcgACGcCgAGCG--AGCg -3'
miRNA:   3'- -GGUCGAGGUUCA--UGCcG-UCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 127341 0.71 0.880185
Target:  5'- gCC-GCUgCCGAG-ACGcucGCGGCGGCGGCg -3'
miRNA:   3'- -GGuCGA-GGUUCaUGC---CGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 127166 0.67 0.980192
Target:  5'- aCCAcCUCCAcccucgccgcAGUcgucgccGCGGCcgcagccgcAGCAGCAGCc -3'
miRNA:   3'- -GGUcGAGGU----------UCA-------UGCCG---------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 127091 0.7 0.900547
Target:  5'- aCCGGC-UgGAGaGCGGCGGCucgccgaugAACAGCu -3'
miRNA:   3'- -GGUCGaGgUUCaUGCCGUCG---------UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 126611 0.67 0.980409
Target:  5'- gCCGGCgCCGAcGUcGCGGCGugagcGCGACcgGGCg -3'
miRNA:   3'- -GGUCGaGGUU-CA-UGCCGU-----CGUUG--UCG- -5'
10711 3' -52.8 NC_002794.1 + 126357 0.73 0.787712
Target:  5'- cCCGGCUCCGauuucgccgcugcguGGgcgccggggccugcGCGGCGGCGugcGCGGCg -3'
miRNA:   3'- -GGUCGAGGU---------------UCa-------------UGCCGUCGU---UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 125743 0.67 0.967225
Target:  5'- -aGGCgggCCGcgGG-ACGGCGGcCGGCGGCu -3'
miRNA:   3'- ggUCGa--GGU--UCaUGCCGUC-GUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 125563 0.71 0.849926
Target:  5'- uUCGGCgacgCCAAGga-GGagAGCGACAGCg -3'
miRNA:   3'- -GGUCGa---GGUUCaugCCg-UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 125533 0.79 0.460788
Target:  5'- gCGGCgaaCGAGcGCGGCGGCAGCGGUu -3'
miRNA:   3'- gGUCGag-GUUCaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 125441 0.67 0.975721
Target:  5'- aUCGGaa-CAAGggcgACGGCGGCGagcACGGCc -3'
miRNA:   3'- -GGUCgagGUUCa---UGCCGUCGU---UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 125351 0.69 0.94435
Target:  5'- aCCGGCagCCGcuGgcCGuCAGCAACAGCg -3'
miRNA:   3'- -GGUCGa-GGUu-CauGCcGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 123396 0.69 0.934852
Target:  5'- cCCugcuGCUCCGcgucggcguggAGUACGaCAGCGACgaGGCg -3'
miRNA:   3'- -GGu---CGAGGU-----------UCAUGCcGUCGUUG--UCG- -5'
10711 3' -52.8 NC_002794.1 + 122944 0.66 0.986129
Target:  5'- gCGGaaCC-GGUGCGGCuggAGCGugAGCc -3'
miRNA:   3'- gGUCgaGGuUCAUGCCG---UCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 122823 0.66 0.984386
Target:  5'- aCCuGUUCUucGaGCGGgAGCGGCAcGCg -3'
miRNA:   3'- -GGuCGAGGuuCaUGCCgUCGUUGU-CG- -5'
10711 3' -52.8 NC_002794.1 + 122774 0.68 0.94874
Target:  5'- --cGCUCCGcGaGCGGCcuCGACGGCg -3'
miRNA:   3'- gguCGAGGUuCaUGCCGucGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 122354 0.66 0.986129
Target:  5'- -gAGCaCCGAGgucugcUACGGCGGCAGCu-- -3'
miRNA:   3'- ggUCGaGGUUC------AUGCCGUCGUUGucg -5'
10711 3' -52.8 NC_002794.1 + 120975 0.75 0.702052
Target:  5'- cCCGGcCUgCGAGUuCGuGUAGCGGCGGCg -3'
miRNA:   3'- -GGUC-GAgGUUCAuGC-CGUCGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.