miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 116470 0.66 0.989163
Target:  5'- gCCGGUUCUuGGUGcCGGC-GUAGC-GCa -3'
miRNA:   3'- -GGUCGAGGuUCAU-GCCGuCGUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 115073 0.66 0.989163
Target:  5'- uCCAG-UCCAcGgccuCGGCGGCcgcccGCAGCc -3'
miRNA:   3'- -GGUCgAGGUuCau--GCCGUCGu----UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 70240 0.66 0.989163
Target:  5'- gCCGGCcgccCCGcAGcagACGcGCAGCGACGGa -3'
miRNA:   3'- -GGUCGa---GGU-UCa--UGC-CGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 54951 0.66 0.989702
Target:  5'- gUCAGCUCgGAGaacuccuugcccccuUGCacgacccgccGCGGCGACGGCg -3'
miRNA:   3'- -GGUCGAGgUUC---------------AUGc---------CGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 59896 0.66 0.989163
Target:  5'- aCCuGCgCCGcGUGC-GCAGCGACAuggGCg -3'
miRNA:   3'- -GGuCGaGGUuCAUGcCGUCGUUGU---CG- -5'
10711 3' -52.8 NC_002794.1 + 67398 0.66 0.987718
Target:  5'- gCCAGCgucggcgCCAGcGU-CGGCgccAGCGucgGCGGCg -3'
miRNA:   3'- -GGUCGa------GGUU-CAuGCCG---UCGU---UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 71578 0.66 0.987718
Target:  5'- uCCGGUacacgcgcuUCCAc-UGCGGCugGGCgAACAGCa -3'
miRNA:   3'- -GGUCG---------AGGUucAUGCCG--UCG-UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 101493 0.66 0.986129
Target:  5'- gCCGGCggCCGguccgagcGGUGCGGCA-CAcgcCGGCg -3'
miRNA:   3'- -GGUCGa-GGU--------UCAUGCCGUcGUu--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 88112 0.66 0.986129
Target:  5'- uCCGGCaUCCAaucAGcacACGGCAGCuu--GCg -3'
miRNA:   3'- -GGUCG-AGGU---UCa--UGCCGUCGuuguCG- -5'
10711 3' -52.8 NC_002794.1 + 117979 0.66 0.986129
Target:  5'- aCCAGCUgguGGUACaGCAGgGGCuGCc -3'
miRNA:   3'- -GGUCGAgguUCAUGcCGUCgUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 101568 0.66 0.986129
Target:  5'- gCCGGCgg-GAGUGcCGGCcGCcGCGGCc -3'
miRNA:   3'- -GGUCGaggUUCAU-GCCGuCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 122354 0.66 0.986129
Target:  5'- -gAGCaCCGAGgucugcUACGGCGGCAGCu-- -3'
miRNA:   3'- ggUCGaGGUUC------AUGCCGUCGUUGucg -5'
10711 3' -52.8 NC_002794.1 + 61891 0.66 0.986129
Target:  5'- gCCGcGCggCGAGcGCGGCgAGC-GCAGCg -3'
miRNA:   3'- -GGU-CGagGUUCaUGCCG-UCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 36361 0.66 0.986129
Target:  5'- gCGGCcaCCGGGUGCGcgcccGCGGCGaaGCGGUc -3'
miRNA:   3'- gGUCGa-GGUUCAUGC-----CGUCGU--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 190599 0.66 0.986129
Target:  5'- gCAGCUCCucca--GGUccGCGACAGCc -3'
miRNA:   3'- gGUCGAGGuucaugCCGu-CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 188980 0.66 0.986129
Target:  5'- cCCAGCUcggCCAccAGccaGCGGCAGCucuccaggucgcGACAGg -3'
miRNA:   3'- -GGUCGA---GGU--UCa--UGCCGUCG------------UUGUCg -5'
10711 3' -52.8 NC_002794.1 + 151918 0.66 0.986129
Target:  5'- gCCgAGCUCCGucUGCGGC-GCA--AGCg -3'
miRNA:   3'- -GG-UCGAGGUucAUGCCGuCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 122944 0.66 0.986129
Target:  5'- gCGGaaCC-GGUGCGGCuggAGCGugAGCc -3'
miRNA:   3'- gGUCgaGGuUCAUGCCG---UCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 57310 0.66 0.987718
Target:  5'- aCC-GCgaccCCGAGUACcuGCAGCGcguccugcuGCAGCu -3'
miRNA:   3'- -GGuCGa---GGUUCAUGc-CGUCGU---------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 184741 0.66 0.986129
Target:  5'- gCCAGgUCCGcgccGGUccagcguuccACGGuCAGCGcCGGCu -3'
miRNA:   3'- -GGUCgAGGU----UCA----------UGCC-GUCGUuGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.