miRNA display CGI


Results 81 - 100 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 12518 0.66 0.983832
Target:  5'- aCCGGCggCUggGUggauuggaaggaacGCGGCGcGC-ACGGCu -3'
miRNA:   3'- -GGUCGa-GGuuCA--------------UGCCGU-CGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 105284 0.66 0.982482
Target:  5'- gCCAGCguugCuCGGGguccCGGCucAGCAGCAGg -3'
miRNA:   3'- -GGUCGa---G-GUUCau--GCCG--UCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 136328 0.66 0.982482
Target:  5'- gCAGCUCUucu--CGGUGGCGGgcCAGCg -3'
miRNA:   3'- gGUCGAGGuucauGCCGUCGUU--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 138748 0.66 0.982482
Target:  5'- cCCGGCccuccgggggCCGAGUcGCGGCGGU--CGGUg -3'
miRNA:   3'- -GGUCGa---------GGUUCA-UGCCGUCGuuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 91194 0.66 0.982482
Target:  5'- cCCGGCgacgCUGuucgcggACGGCGacGCGACGGCg -3'
miRNA:   3'- -GGUCGa---GGUuca----UGCCGU--CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 84283 0.66 0.982482
Target:  5'- gCAGCUgCCGAcg--GGgAGCGGCGGCg -3'
miRNA:   3'- gGUCGA-GGUUcaugCCgUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 52573 0.66 0.982482
Target:  5'- aCCGGCgCCucAGaGCcGCAGCAcGCAGCc -3'
miRNA:   3'- -GGUCGaGGu-UCaUGcCGUCGU-UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 31773 0.66 0.984203
Target:  5'- aUguGCUCCGGGgucaGCGGUAGCccGAacucgauguacuuCAGCa -3'
miRNA:   3'- -GguCGAGGUUCa---UGCCGUCG--UU-------------GUCG- -5'
10711 3' -52.8 NC_002794.1 + 68549 0.66 0.984386
Target:  5'- gCGGCcgaCAAGcUGCGGguGUcgccGACGGCg -3'
miRNA:   3'- gGUCGag-GUUC-AUGCCguCG----UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 58062 0.66 0.984386
Target:  5'- gCGGCcCCG---GCGGCGGCGggacggGCGGCc -3'
miRNA:   3'- gGUCGaGGUucaUGCCGUCGU------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 117979 0.66 0.986129
Target:  5'- aCCAGCUgguGGUACaGCAGgGGCuGCc -3'
miRNA:   3'- -GGUCGAgguUCAUGcCGUCgUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 88112 0.66 0.986129
Target:  5'- uCCGGCaUCCAaucAGcacACGGCAGCuu--GCg -3'
miRNA:   3'- -GGUCG-AGGU---UCa--UGCCGUCGuuguCG- -5'
10711 3' -52.8 NC_002794.1 + 101493 0.66 0.986129
Target:  5'- gCCGGCggCCGguccgagcGGUGCGGCA-CAcgcCGGCg -3'
miRNA:   3'- -GGUCGa-GGU--------UCAUGCCGUcGUu--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 10826 0.66 0.986129
Target:  5'- cCUGGCUCCGAG-ACGGCGcccuGCucguCAcGCu -3'
miRNA:   3'- -GGUCGAGGUUCaUGCCGU----CGuu--GU-CG- -5'
10711 3' -52.8 NC_002794.1 + 92808 0.66 0.986129
Target:  5'- aCCaaGGCgCCAAGU---GCAGCAAgAGCg -3'
miRNA:   3'- -GG--UCGaGGUUCAugcCGUCGUUgUCG- -5'
10711 3' -52.8 NC_002794.1 + 176961 0.66 0.984386
Target:  5'- gCAGCgggaccUCCGGGUAuccCGGgAGUAcCAGCg -3'
miRNA:   3'- gGUCG------AGGUUCAU---GCCgUCGUuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 110640 0.66 0.985961
Target:  5'- gCGGCggggUCGGGUuucuccgGCGGCuGCAgacaguGCAGCa -3'
miRNA:   3'- gGUCGa---GGUUCA-------UGCCGuCGU------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 151214 0.66 0.984386
Target:  5'- gCCGGCUaCCGGGucUugGGCcagGGCuacCGGCu -3'
miRNA:   3'- -GGUCGA-GGUUC--AugCCG---UCGuu-GUCG- -5'
10711 3' -52.8 NC_002794.1 + 122823 0.66 0.984386
Target:  5'- aCCuGUUCUucGaGCGGgAGCGGCAcGCg -3'
miRNA:   3'- -GGuCGAGGuuCaUGCCgUCGUUGU-CG- -5'
10711 3' -52.8 NC_002794.1 + 117933 0.66 0.984386
Target:  5'- cCCgAGgUCCAGGUcGCGGacgaAGU-ACAGCa -3'
miRNA:   3'- -GG-UCgAGGUUCA-UGCCg---UCGuUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.