miRNA display CGI


Results 121 - 140 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 127166 0.67 0.980192
Target:  5'- aCCAcCUCCAcccucgccgcAGUcgucgccGCGGCcgcagccgcAGCAGCAGCc -3'
miRNA:   3'- -GGUcGAGGU----------UCA-------UGCCG---------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 115393 0.67 0.978158
Target:  5'- gCCGGC-CCGuGcUGCGGacucCAGUGGCGGCa -3'
miRNA:   3'- -GGUCGaGGUuC-AUGCC----GUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 93639 0.66 0.982283
Target:  5'- gCAGCcugaacgugaacUCCAuGGgggGCGGCGauuaccgcuacauGCGACAGCg -3'
miRNA:   3'- gGUCG------------AGGU-UCa--UGCCGU-------------CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 14480 0.66 0.982482
Target:  5'- gCCGcGCUCgcuGUucGCGGCGGCGgcccgcgcucGCGGCg -3'
miRNA:   3'- -GGU-CGAGguuCA--UGCCGUCGU----------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 113280 0.66 0.982482
Target:  5'- gCCAGCUCCcgcGUcugcuCGGC-GCAGC-GCu -3'
miRNA:   3'- -GGUCGAGGuu-CAu----GCCGuCGUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 58062 0.66 0.984386
Target:  5'- gCGGCcCCG---GCGGCGGCGggacggGCGGCc -3'
miRNA:   3'- gGUCGaGGUucaUGCCGUCGU------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 68549 0.66 0.984386
Target:  5'- gCGGCcgaCAAGcUGCGGguGUcgccGACGGCg -3'
miRNA:   3'- gGUCGag-GUUC-AUGCCguCG----UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 31773 0.66 0.984203
Target:  5'- aUguGCUCCGGGgucaGCGGUAGCccGAacucgauguacuuCAGCa -3'
miRNA:   3'- -GguCGAGGUUCa---UGCCGUCG--UU-------------GUCG- -5'
10711 3' -52.8 NC_002794.1 + 4432 0.66 0.984386
Target:  5'- cCCaAGCUCCAAGcuucCGGCcGauacGCGGCg -3'
miRNA:   3'- -GG-UCGAGGUUCau--GCCGuCgu--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 152557 0.66 0.984386
Target:  5'- -gAGUgCCAGGaGCGGCGcuucaccgccGCGGCGGCc -3'
miRNA:   3'- ggUCGaGGUUCaUGCCGU----------CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 195621 0.66 0.982482
Target:  5'- uCCGGC-CCAA--ACGGCcGGCGACgacgAGCc -3'
miRNA:   3'- -GGUCGaGGUUcaUGCCG-UCGUUG----UCG- -5'
10711 3' -52.8 NC_002794.1 + 12518 0.66 0.983832
Target:  5'- aCCGGCggCUggGUggauuggaaggaacGCGGCGcGC-ACGGCu -3'
miRNA:   3'- -GGUCGa-GGuuCA--------------UGCCGU-CGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 105284 0.66 0.982482
Target:  5'- gCCAGCguugCuCGGGguccCGGCucAGCAGCAGg -3'
miRNA:   3'- -GGUCGa---G-GUUCau--GCCG--UCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 136328 0.66 0.982482
Target:  5'- gCAGCUCUucu--CGGUGGCGGgcCAGCg -3'
miRNA:   3'- gGUCGAGGuucauGCCGUCGUU--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 138748 0.66 0.982482
Target:  5'- cCCGGCccuccgggggCCGAGUcGCGGCGGU--CGGUg -3'
miRNA:   3'- -GGUCGa---------GGUUCA-UGCCGUCGuuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 91194 0.66 0.982482
Target:  5'- cCCGGCgacgCUGuucgcggACGGCGacGCGACGGCg -3'
miRNA:   3'- -GGUCGa---GGUuca----UGCCGU--CGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 84283 0.66 0.982482
Target:  5'- gCAGCUgCCGAcg--GGgAGCGGCGGCg -3'
miRNA:   3'- gGUCGA-GGUUcaugCCgUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 52573 0.66 0.982482
Target:  5'- aCCGGCgCCucAGaGCcGCAGCAcGCAGCc -3'
miRNA:   3'- -GGUCGaGGu-UCaUGcCGUCGU-UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 44351 0.66 0.982482
Target:  5'- gCCGGCgagaCCGAGagcGCGGCGggcGCGACGuccGCg -3'
miRNA:   3'- -GGUCGa---GGUUCa--UGCCGU---CGUUGU---CG- -5'
10711 3' -52.8 NC_002794.1 + 19778 0.66 0.982482
Target:  5'- aCCAGCUCCGGGUGCuccugacGCuGCuccgcucgGACcGCg -3'
miRNA:   3'- -GGUCGAGGUUCAUGc------CGuCG--------UUGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.