Results 41 - 60 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10711 | 3' | -52.8 | NC_002794.1 | + | 116470 | 0.66 | 0.989163 |
Target: 5'- gCCGGUUCUuGGUGcCGGC-GUAGC-GCa -3' miRNA: 3'- -GGUCGAGGuUCAU-GCCGuCGUUGuCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 115073 | 0.66 | 0.989163 |
Target: 5'- uCCAG-UCCAcGgccuCGGCGGCcgcccGCAGCc -3' miRNA: 3'- -GGUCgAGGUuCau--GCCGUCGu----UGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 70240 | 0.66 | 0.989163 |
Target: 5'- gCCGGCcgccCCGcAGcagACGcGCAGCGACGGa -3' miRNA: 3'- -GGUCGa---GGU-UCa--UGC-CGUCGUUGUCg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 54951 | 0.66 | 0.989702 |
Target: 5'- gUCAGCUCgGAGaacuccuugcccccuUGCacgacccgccGCGGCGACGGCg -3' miRNA: 3'- -GGUCGAGgUUC---------------AUGc---------CGUCGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 59896 | 0.66 | 0.989163 |
Target: 5'- aCCuGCgCCGcGUGC-GCAGCGACAuggGCg -3' miRNA: 3'- -GGuCGaGGUuCAUGcCGUCGUUGU---CG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 67398 | 0.66 | 0.987718 |
Target: 5'- gCCAGCgucggcgCCAGcGU-CGGCgccAGCGucgGCGGCg -3' miRNA: 3'- -GGUCGa------GGUU-CAuGCCG---UCGU---UGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 71578 | 0.66 | 0.987718 |
Target: 5'- uCCGGUacacgcgcuUCCAc-UGCGGCugGGCgAACAGCa -3' miRNA: 3'- -GGUCG---------AGGUucAUGCCG--UCG-UUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 101493 | 0.66 | 0.986129 |
Target: 5'- gCCGGCggCCGguccgagcGGUGCGGCA-CAcgcCGGCg -3' miRNA: 3'- -GGUCGa-GGU--------UCAUGCCGUcGUu--GUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 88112 | 0.66 | 0.986129 |
Target: 5'- uCCGGCaUCCAaucAGcacACGGCAGCuu--GCg -3' miRNA: 3'- -GGUCG-AGGU---UCa--UGCCGUCGuuguCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 117979 | 0.66 | 0.986129 |
Target: 5'- aCCAGCUgguGGUACaGCAGgGGCuGCc -3' miRNA: 3'- -GGUCGAgguUCAUGcCGUCgUUGuCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 101568 | 0.66 | 0.986129 |
Target: 5'- gCCGGCgg-GAGUGcCGGCcGCcGCGGCc -3' miRNA: 3'- -GGUCGaggUUCAU-GCCGuCGuUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 122354 | 0.66 | 0.986129 |
Target: 5'- -gAGCaCCGAGgucugcUACGGCGGCAGCu-- -3' miRNA: 3'- ggUCGaGGUUC------AUGCCGUCGUUGucg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 61891 | 0.66 | 0.986129 |
Target: 5'- gCCGcGCggCGAGcGCGGCgAGC-GCAGCg -3' miRNA: 3'- -GGU-CGagGUUCaUGCCG-UCGuUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 36361 | 0.66 | 0.986129 |
Target: 5'- gCGGCcaCCGGGUGCGcgcccGCGGCGaaGCGGUc -3' miRNA: 3'- gGUCGa-GGUUCAUGC-----CGUCGU--UGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 190599 | 0.66 | 0.986129 |
Target: 5'- gCAGCUCCucca--GGUccGCGACAGCc -3' miRNA: 3'- gGUCGAGGuucaugCCGu-CGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 188980 | 0.66 | 0.986129 |
Target: 5'- cCCAGCUcggCCAccAGccaGCGGCAGCucuccaggucgcGACAGg -3' miRNA: 3'- -GGUCGA---GGU--UCa--UGCCGUCG------------UUGUCg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 151918 | 0.66 | 0.986129 |
Target: 5'- gCCgAGCUCCGucUGCGGC-GCA--AGCg -3' miRNA: 3'- -GG-UCGAGGUucAUGCCGuCGUugUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 122944 | 0.66 | 0.986129 |
Target: 5'- gCGGaaCC-GGUGCGGCuggAGCGugAGCc -3' miRNA: 3'- gGUCgaGGuUCAUGCCG---UCGUugUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 57310 | 0.66 | 0.987718 |
Target: 5'- aCC-GCgaccCCGAGUACcuGCAGCGcguccugcuGCAGCu -3' miRNA: 3'- -GGuCGa---GGUUCAUGc-CGUCGU---------UGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 184741 | 0.66 | 0.986129 |
Target: 5'- gCCAGgUCCGcgccGGUccagcguuccACGGuCAGCGcCGGCu -3' miRNA: 3'- -GGUCgAGGU----UCA----------UGCC-GUCGUuGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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