Results 61 - 80 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10711 | 3' | -52.8 | NC_002794.1 | + | 151918 | 0.66 | 0.986129 |
Target: 5'- gCCgAGCUCCGucUGCGGC-GCA--AGCg -3' miRNA: 3'- -GG-UCGAGGUucAUGCCGuCGUugUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 188980 | 0.66 | 0.986129 |
Target: 5'- cCCAGCUcggCCAccAGccaGCGGCAGCucuccaggucgcGACAGg -3' miRNA: 3'- -GGUCGA---GGU--UCa--UGCCGUCG------------UUGUCg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 176961 | 0.66 | 0.984386 |
Target: 5'- gCAGCgggaccUCCGGGUAuccCGGgAGUAcCAGCg -3' miRNA: 3'- gGUCG------AGGUUCAU---GCCgUCGUuGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 110640 | 0.66 | 0.985961 |
Target: 5'- gCGGCggggUCGGGUuucuccgGCGGCuGCAgacaguGCAGCa -3' miRNA: 3'- gGUCGa---GGUUCA-------UGCCGuCGU------UGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 151214 | 0.66 | 0.984386 |
Target: 5'- gCCGGCUaCCGGGucUugGGCcagGGCuacCGGCu -3' miRNA: 3'- -GGUCGA-GGUUC--AugCCG---UCGuu-GUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 122823 | 0.66 | 0.984386 |
Target: 5'- aCCuGUUCUucGaGCGGgAGCGGCAcGCg -3' miRNA: 3'- -GGuCGAGGuuCaUGCCgUCGUUGU-CG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 117933 | 0.66 | 0.984386 |
Target: 5'- cCCgAGgUCCAGGUcGCGGacgaAGU-ACAGCa -3' miRNA: 3'- -GG-UCgAGGUUCA-UGCCg---UCGuUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 58062 | 0.66 | 0.984386 |
Target: 5'- gCGGCcCCG---GCGGCGGCGggacggGCGGCc -3' miRNA: 3'- gGUCGaGGUucaUGCCGUCGU------UGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 68549 | 0.66 | 0.984386 |
Target: 5'- gCGGCcgaCAAGcUGCGGguGUcgccGACGGCg -3' miRNA: 3'- gGUCGag-GUUC-AUGCCguCG----UUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 31773 | 0.66 | 0.984203 |
Target: 5'- aUguGCUCCGGGgucaGCGGUAGCccGAacucgauguacuuCAGCa -3' miRNA: 3'- -GguCGAGGUUCa---UGCCGUCG--UU-------------GUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 92808 | 0.66 | 0.986129 |
Target: 5'- aCCaaGGCgCCAAGU---GCAGCAAgAGCg -3' miRNA: 3'- -GG--UCGaGGUUCAugcCGUCGUUgUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 10826 | 0.66 | 0.986129 |
Target: 5'- cCUGGCUCCGAG-ACGGCGcccuGCucguCAcGCu -3' miRNA: 3'- -GGUCGAGGUUCaUGCCGU----CGuu--GU-CG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 190599 | 0.66 | 0.986129 |
Target: 5'- gCAGCUCCucca--GGUccGCGACAGCc -3' miRNA: 3'- gGUCGAGGuucaugCCGu-CGUUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 36361 | 0.66 | 0.986129 |
Target: 5'- gCGGCcaCCGGGUGCGcgcccGCGGCGaaGCGGUc -3' miRNA: 3'- gGUCGa-GGUUCAUGC-----CGUCGU--UGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 61891 | 0.66 | 0.986129 |
Target: 5'- gCCGcGCggCGAGcGCGGCgAGC-GCAGCg -3' miRNA: 3'- -GGU-CGagGUUCaUGCCG-UCGuUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 122354 | 0.66 | 0.986129 |
Target: 5'- -gAGCaCCGAGgucugcUACGGCGGCAGCu-- -3' miRNA: 3'- ggUCGaGGUUC------AUGCCGUCGUUGucg -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 101568 | 0.66 | 0.986129 |
Target: 5'- gCCGGCgg-GAGUGcCGGCcGCcGCGGCc -3' miRNA: 3'- -GGUCGaggUUCAU-GCCGuCGuUGUCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 117979 | 0.66 | 0.986129 |
Target: 5'- aCCAGCUgguGGUACaGCAGgGGCuGCc -3' miRNA: 3'- -GGUCGAgguUCAUGcCGUCgUUGuCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 88112 | 0.66 | 0.986129 |
Target: 5'- uCCGGCaUCCAaucAGcacACGGCAGCuu--GCg -3' miRNA: 3'- -GGUCG-AGGU---UCa--UGCCGUCGuuguCG- -5' |
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10711 | 3' | -52.8 | NC_002794.1 | + | 101493 | 0.66 | 0.986129 |
Target: 5'- gCCGGCggCCGguccgagcGGUGCGGCA-CAcgcCGGCg -3' miRNA: 3'- -GGUCGa-GGU--------UCAUGCCGUcGUu--GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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