miRNA display CGI


Results 1 - 20 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 5' -64 NC_002794.1 + 185066 1.1 0.000657
Target:  5'- gCAGCCGCCGCGGCCCGUCGCCGUAGCa -3'
miRNA:   3'- -GUCGGCGGCGCCGGGCAGCGGCAUCG- -5'
10711 5' -64 NC_002794.1 + 111624 0.83 0.054381
Target:  5'- gGGCCGCCGCGG-CCGcCGCCGgucgGGCg -3'
miRNA:   3'- gUCGGCGGCGCCgGGCaGCGGCa---UCG- -5'
10711 5' -64 NC_002794.1 + 47408 0.83 0.055764
Target:  5'- aAGCCGCCGuCGGCgCCGUCGCgCGgAGCg -3'
miRNA:   3'- gUCGGCGGC-GCCG-GGCAGCG-GCaUCG- -5'
10711 5' -64 NC_002794.1 + 41247 0.81 0.078882
Target:  5'- gCGGCCGCCgacgccgGCGGCCCGUCGUCGc-GCu -3'
miRNA:   3'- -GUCGGCGG-------CGCCGGGCAGCGGCauCG- -5'
10711 5' -64 NC_002794.1 + 70672 0.81 0.079078
Target:  5'- gCGGCCGCCGCGGCggugacgucCUGUCGCCGcUGGg -3'
miRNA:   3'- -GUCGGCGGCGCCG---------GGCAGCGGC-AUCg -5'
10711 5' -64 NC_002794.1 + 187559 0.81 0.079078
Target:  5'- -cGCCGCCGUcgGGCCCGUaccCGCCGUcGGCg -3'
miRNA:   3'- guCGGCGGCG--CCGGGCA---GCGGCA-UCG- -5'
10711 5' -64 NC_002794.1 + 49476 0.81 0.083091
Target:  5'- cCGGCCGCCGCGGgucugucgacCUCGUCGCCGUcGUc -3'
miRNA:   3'- -GUCGGCGGCGCC----------GGGCAGCGGCAuCG- -5'
10711 5' -64 NC_002794.1 + 186366 0.81 0.083091
Target:  5'- cCAGCCGCCGCcGCCgccguCGUCGCCGcAGCc -3'
miRNA:   3'- -GUCGGCGGCGcCGG-----GCAGCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 124386 0.8 0.089478
Target:  5'- uCGGUCGCgGCGGCgCGUCGCCGgucgucggGGCg -3'
miRNA:   3'- -GUCGGCGgCGCCGgGCAGCGGCa-------UCG- -5'
10711 5' -64 NC_002794.1 + 125952 0.8 0.093993
Target:  5'- uGGCCGCCuGCGcGCUCGUCGCCG-AGUu -3'
miRNA:   3'- gUCGGCGG-CGC-CGGGCAGCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 193417 0.8 0.098722
Target:  5'- -cGCCGCCGCcGCCCGUCguccaGCCGUccGGCa -3'
miRNA:   3'- guCGGCGGCGcCGGGCAG-----CGGCA--UCG- -5'
10711 5' -64 NC_002794.1 + 124274 0.8 0.098722
Target:  5'- cCAGCCGCCGCGccGUCCGUCGUCGcccGCu -3'
miRNA:   3'- -GUCGGCGGCGC--CGGGCAGCGGCau-CG- -5'
10711 5' -64 NC_002794.1 + 49428 0.79 0.108862
Target:  5'- gCGGCCGUCaCGGCguccggcgcggUCGUCGCCGUGGCg -3'
miRNA:   3'- -GUCGGCGGcGCCG-----------GGCAGCGGCAUCG- -5'
10711 5' -64 NC_002794.1 + 101581 0.79 0.111546
Target:  5'- cCGGCCGCCGCGGCCgGgggggcgggUGCCGgcccgccgGGCg -3'
miRNA:   3'- -GUCGGCGGCGCCGGgCa--------GCGGCa-------UCG- -5'
10711 5' -64 NC_002794.1 + 81323 0.79 0.1171
Target:  5'- uCGGCCaaGCCGCGGUacgcuccgCCGUCGCCGacgGGCa -3'
miRNA:   3'- -GUCGG--CGGCGCCG--------GGCAGCGGCa--UCG- -5'
10711 5' -64 NC_002794.1 + 32299 0.78 0.125917
Target:  5'- -cGCCGCCGCGGCggCCG-CGCCGgccGCg -3'
miRNA:   3'- guCGGCGGCGCCG--GGCaGCGGCau-CG- -5'
10711 5' -64 NC_002794.1 + 69800 0.78 0.125917
Target:  5'- -cGCCGCCGCGuaGCCCGcCGCCGcgaccGGCg -3'
miRNA:   3'- guCGGCGGCGC--CGGGCaGCGGCa----UCG- -5'
10711 5' -64 NC_002794.1 + 186294 0.78 0.128989
Target:  5'- -cGCgGCCagGCGGCCgGUCGCCGcGGCg -3'
miRNA:   3'- guCGgCGG--CGCCGGgCAGCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 80442 0.77 0.138628
Target:  5'- cCGGCgGCCGcCGGCCCGUCGgCGgcccGCu -3'
miRNA:   3'- -GUCGgCGGC-GCCGGGCAGCgGCau--CG- -5'
10711 5' -64 NC_002794.1 + 71749 0.77 0.14438
Target:  5'- aGGCCGCCGCcggcucuuccgaccGGUCCG-CGCCGUcGCg -3'
miRNA:   3'- gUCGGCGGCG--------------CCGGGCaGCGGCAuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.