miRNA display CGI


Results 21 - 40 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 5' -64 NC_002794.1 + 150409 0.66 0.641255
Target:  5'- gCGGCagaaGCCGUGGCCCGcgagGCUGgaccuggaguccgGGCg -3'
miRNA:   3'- -GUCGg---CGGCGCCGGGCag--CGGCa------------UCG- -5'
10711 5' -64 NC_002794.1 + 189780 0.66 0.635554
Target:  5'- cCAGCCGCgggaUGCGGaaaucgCCGUCGaaccCCGgcgGGCg -3'
miRNA:   3'- -GUCGGCG----GCGCCg-----GGCAGC----GGCa--UCG- -5'
10711 5' -64 NC_002794.1 + 137647 0.66 0.635554
Target:  5'- gCGGgCGCCG-GGCCUccggCGCCGcUGGUg -3'
miRNA:   3'- -GUCgGCGGCgCCGGGca--GCGGC-AUCG- -5'
10711 5' -64 NC_002794.1 + 191654 0.66 0.635554
Target:  5'- gCAGcCCGCCGgGGgaCGgCGCCGgcAGCg -3'
miRNA:   3'- -GUC-GGCGGCgCCggGCaGCGGCa-UCG- -5'
10711 5' -64 NC_002794.1 + 79027 0.66 0.635554
Target:  5'- uCGGCCGCCuucugcCGGCCCGgcCGCUcccGCg -3'
miRNA:   3'- -GUCGGCGGc-----GCCGGGCa-GCGGcauCG- -5'
10711 5' -64 NC_002794.1 + 96759 0.66 0.635554
Target:  5'- aAGCgGCCgGCGGUCgaGUCGCCcggGGUc -3'
miRNA:   3'- gUCGgCGG-CGCCGGg-CAGCGGca-UCG- -5'
10711 5' -64 NC_002794.1 + 116907 0.66 0.635554
Target:  5'- cCGGCgGCCGguccggcguCGGCuCCGgCGUCGUcGGCg -3'
miRNA:   3'- -GUCGgCGGC---------GCCG-GGCaGCGGCA-UCG- -5'
10711 5' -64 NC_002794.1 + 34806 0.66 0.635554
Target:  5'- cCGGCCcggGCCGCGcgacaccacCCCcUCGCCGgcGCc -3'
miRNA:   3'- -GUCGG---CGGCGCc--------GGGcAGCGGCauCG- -5'
10711 5' -64 NC_002794.1 + 120714 0.66 0.635554
Target:  5'- -cGCCGCCGUcGUUCuUCGUCGUGGg -3'
miRNA:   3'- guCGGCGGCGcCGGGcAGCGGCAUCg -5'
10711 5' -64 NC_002794.1 + 121453 0.66 0.635554
Target:  5'- aCGGCCGCCGuCGGgucgaCCGUCGagaCGaccGCc -3'
miRNA:   3'- -GUCGGCGGC-GCCg----GGCAGCg--GCau-CG- -5'
10711 5' -64 NC_002794.1 + 127603 0.66 0.635554
Target:  5'- gCGGCCGCUgaGCGGCgcggaccggacUCGUCGUCGacGCc -3'
miRNA:   3'- -GUCGGCGG--CGCCG-----------GGCAGCGGCauCG- -5'
10711 5' -64 NC_002794.1 + 150241 0.66 0.635554
Target:  5'- gCAGCuggaagCGCUGCGGCUCGU-GCCGcucGGUc -3'
miRNA:   3'- -GUCG------GCGGCGCCGGGCAgCGGCa--UCG- -5'
10711 5' -64 NC_002794.1 + 133925 0.66 0.635554
Target:  5'- aCGGCgGCCGC-GCCCGUC-CaGUuGCg -3'
miRNA:   3'- -GUCGgCGGCGcCGGGCAGcGgCAuCG- -5'
10711 5' -64 NC_002794.1 + 123582 0.66 0.626051
Target:  5'- aCGGCCGCCgcccgugcaGCGuCCCGgaaCGCCuGUGGg -3'
miRNA:   3'- -GUCGGCGG---------CGCcGGGCa--GCGG-CAUCg -5'
10711 5' -64 NC_002794.1 + 42641 0.66 0.626051
Target:  5'- aCAGCggaGUCGCGGCCgaagccgaCGgCGCCGccGGCa -3'
miRNA:   3'- -GUCGg--CGGCGCCGG--------GCaGCGGCa-UCG- -5'
10711 5' -64 NC_002794.1 + 30392 0.66 0.626051
Target:  5'- uGGCCGcCCGCGaCgUGaUGCCGUGGUc -3'
miRNA:   3'- gUCGGC-GGCGCcGgGCaGCGGCAUCG- -5'
10711 5' -64 NC_002794.1 + 181449 0.66 0.626051
Target:  5'- gGGCCGCC-CGGaggacgucuuaCCCG-CGCCG-AGUc -3'
miRNA:   3'- gUCGGCGGcGCC-----------GGGCaGCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 181495 0.66 0.626051
Target:  5'- gAGCC-CCGCGaGCCCGaCGCuCGUc-- -3'
miRNA:   3'- gUCGGcGGCGC-CGGGCaGCG-GCAucg -5'
10711 5' -64 NC_002794.1 + 192525 0.66 0.626051
Target:  5'- cCGGuuGCCGCGcGUCagccaGUuaaagugccCGUCGUAGCg -3'
miRNA:   3'- -GUCggCGGCGC-CGGg----CA---------GCGGCAUCG- -5'
10711 5' -64 NC_002794.1 + 143563 0.66 0.626051
Target:  5'- uGGCCcaGCCGUGcGCgCCGUCcucggcggcGCUGUGGUc -3'
miRNA:   3'- gUCGG--CGGCGC-CG-GGCAG---------CGGCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.