Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10712 | 5' | -61.6 | NC_002794.1 | + | 84767 | 0.66 | 0.770143 |
Target: 5'- ---aGAGGGcCGucCGaGGCCCGGCCc-- -3' miRNA: 3'- ccaaCUCCCaGU--GC-CCGGGCCGGcag -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 116056 | 0.66 | 0.761247 |
Target: 5'- gGGggGAgcgcgacugGGGUCGCGgagcgcucGGCgCGGCgGUCg -3' miRNA: 3'- -CCaaCU---------CCCAGUGC--------CCGgGCCGgCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 143694 | 0.66 | 0.733982 |
Target: 5'- ---cGcAGGGUCgcguugcccaccGCGGGCCCcGGCgggCGUCg -3' miRNA: 3'- ccaaC-UCCCAG------------UGCCCGGG-CCG---GCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 117444 | 0.66 | 0.724728 |
Target: 5'- cGUUGcGGauGUCGCGGaagacGCCgCGGUCGUCg -3' miRNA: 3'- cCAACuCC--CAGUGCC-----CGG-GCCGGCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 122994 | 0.66 | 0.724728 |
Target: 5'- uGGUgc-GGGcCgugcugACGGGCCggcUGGCCGUCg -3' miRNA: 3'- -CCAacuCCCaG------UGCCCGG---GCCGGCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 40403 | 0.67 | 0.715402 |
Target: 5'- ---cGAuucGGUCGCGGGgUCGGCCGg- -3' miRNA: 3'- ccaaCUc--CCAGUGCCCgGGCCGGCag -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 90194 | 0.67 | 0.706014 |
Target: 5'- ---cGGGGG-CACGGuGCCCGcGCC-UCc -3' miRNA: 3'- ccaaCUCCCaGUGCC-CGGGC-CGGcAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 98943 | 0.67 | 0.706014 |
Target: 5'- cGGgaaGGGG-CugGGGCUCGugcugggcGCCGUCg -3' miRNA: 3'- -CCaacUCCCaGugCCCGGGC--------CGGCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 22856 | 0.67 | 0.706014 |
Target: 5'- ---cGAGGaUCcCGGacguCCCGGCCGUCg -3' miRNA: 3'- ccaaCUCCcAGuGCCc---GGGCCGGCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 13786 | 0.67 | 0.674682 |
Target: 5'- ---cGGGuGGcUCcggccgucuucgcgACGGGCCCGGCCGg- -3' miRNA: 3'- ccaaCUC-CC-AG--------------UGCCCGGGCCGGCag -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 126432 | 0.67 | 0.667984 |
Target: 5'- uGGUcGAGGuGUgGgcgccucggcccUGGGUCCGGCuCGUCg -3' miRNA: 3'- -CCAaCUCC-CAgU------------GCCCGGGCCG-GCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 52889 | 0.67 | 0.667984 |
Target: 5'- uGGU--GGGGUCgaACGcGGCgCCGccGCCGUCg -3' miRNA: 3'- -CCAacUCCCAG--UGC-CCG-GGC--CGGCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 128477 | 0.68 | 0.658394 |
Target: 5'- cGGUcaccGGGUCGCGGaCCgggGGCCGUCc -3' miRNA: 3'- -CCAacu-CCCAGUGCCcGGg--CCGGCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 123267 | 0.68 | 0.6007 |
Target: 5'- ---gGcuGGUC-CGGGCCgCGGUCGUCg -3' miRNA: 3'- ccaaCucCCAGuGCCCGG-GCCGGCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 13341 | 0.69 | 0.59112 |
Target: 5'- cGGUcGGGGGUgGCGGcGCCCcucgcccgGGCCcUCc -3' miRNA: 3'- -CCAaCUCCCAgUGCC-CGGG--------CCGGcAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 139878 | 0.69 | 0.59112 |
Target: 5'- aGGUUGAugcaagucucGGuGaUGCGGGCCagccgcaGGCCGUCg -3' miRNA: 3'- -CCAACU----------CC-CaGUGCCCGGg------CCGGCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 142719 | 0.69 | 0.59112 |
Target: 5'- uGGUggUGGGGGUCGCGGuaacGCa-GGCCGa- -3' miRNA: 3'- -CCA--ACUCCCAGUGCC----CGggCCGGCag -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 156015 | 0.69 | 0.581566 |
Target: 5'- ---cGGGGGUCucAUGGGUCgCaGCCGUCg -3' miRNA: 3'- ccaaCUCCCAG--UGCCCGG-GcCGGCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 187678 | 0.69 | 0.56256 |
Target: 5'- cGGgcGAugcGGGUCGaGcGGCCCguuGGCCGUCu -3' miRNA: 3'- -CCaaCU---CCCAGUgC-CCGGG---CCGGCAG- -5' |
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10712 | 5' | -61.6 | NC_002794.1 | + | 128265 | 0.7 | 0.534385 |
Target: 5'- cGGUcGGGGccgagCGCGGaGCCgaCGGCCGUCu -3' miRNA: 3'- -CCAaCUCCca---GUGCC-CGG--GCCGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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