miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10712 5' -61.6 NC_002794.1 + 84767 0.66 0.770143
Target:  5'- ---aGAGGGcCGucCGaGGCCCGGCCc-- -3'
miRNA:   3'- ccaaCUCCCaGU--GC-CCGGGCCGGcag -5'
10712 5' -61.6 NC_002794.1 + 116056 0.66 0.761247
Target:  5'- gGGggGAgcgcgacugGGGUCGCGgagcgcucGGCgCGGCgGUCg -3'
miRNA:   3'- -CCaaCU---------CCCAGUGC--------CCGgGCCGgCAG- -5'
10712 5' -61.6 NC_002794.1 + 143694 0.66 0.733982
Target:  5'- ---cGcAGGGUCgcguugcccaccGCGGGCCCcGGCgggCGUCg -3'
miRNA:   3'- ccaaC-UCCCAG------------UGCCCGGG-CCG---GCAG- -5'
10712 5' -61.6 NC_002794.1 + 117444 0.66 0.724728
Target:  5'- cGUUGcGGauGUCGCGGaagacGCCgCGGUCGUCg -3'
miRNA:   3'- cCAACuCC--CAGUGCC-----CGG-GCCGGCAG- -5'
10712 5' -61.6 NC_002794.1 + 122994 0.66 0.724728
Target:  5'- uGGUgc-GGGcCgugcugACGGGCCggcUGGCCGUCg -3'
miRNA:   3'- -CCAacuCCCaG------UGCCCGG---GCCGGCAG- -5'
10712 5' -61.6 NC_002794.1 + 40403 0.67 0.715402
Target:  5'- ---cGAuucGGUCGCGGGgUCGGCCGg- -3'
miRNA:   3'- ccaaCUc--CCAGUGCCCgGGCCGGCag -5'
10712 5' -61.6 NC_002794.1 + 90194 0.67 0.706014
Target:  5'- ---cGGGGG-CACGGuGCCCGcGCC-UCc -3'
miRNA:   3'- ccaaCUCCCaGUGCC-CGGGC-CGGcAG- -5'
10712 5' -61.6 NC_002794.1 + 98943 0.67 0.706014
Target:  5'- cGGgaaGGGG-CugGGGCUCGugcugggcGCCGUCg -3'
miRNA:   3'- -CCaacUCCCaGugCCCGGGC--------CGGCAG- -5'
10712 5' -61.6 NC_002794.1 + 22856 0.67 0.706014
Target:  5'- ---cGAGGaUCcCGGacguCCCGGCCGUCg -3'
miRNA:   3'- ccaaCUCCcAGuGCCc---GGGCCGGCAG- -5'
10712 5' -61.6 NC_002794.1 + 13786 0.67 0.674682
Target:  5'- ---cGGGuGGcUCcggccgucuucgcgACGGGCCCGGCCGg- -3'
miRNA:   3'- ccaaCUC-CC-AG--------------UGCCCGGGCCGGCag -5'
10712 5' -61.6 NC_002794.1 + 126432 0.67 0.667984
Target:  5'- uGGUcGAGGuGUgGgcgccucggcccUGGGUCCGGCuCGUCg -3'
miRNA:   3'- -CCAaCUCC-CAgU------------GCCCGGGCCG-GCAG- -5'
10712 5' -61.6 NC_002794.1 + 52889 0.67 0.667984
Target:  5'- uGGU--GGGGUCgaACGcGGCgCCGccGCCGUCg -3'
miRNA:   3'- -CCAacUCCCAG--UGC-CCG-GGC--CGGCAG- -5'
10712 5' -61.6 NC_002794.1 + 128477 0.68 0.658394
Target:  5'- cGGUcaccGGGUCGCGGaCCgggGGCCGUCc -3'
miRNA:   3'- -CCAacu-CCCAGUGCCcGGg--CCGGCAG- -5'
10712 5' -61.6 NC_002794.1 + 123267 0.68 0.6007
Target:  5'- ---gGcuGGUC-CGGGCCgCGGUCGUCg -3'
miRNA:   3'- ccaaCucCCAGuGCCCGG-GCCGGCAG- -5'
10712 5' -61.6 NC_002794.1 + 13341 0.69 0.59112
Target:  5'- cGGUcGGGGGUgGCGGcGCCCcucgcccgGGCCcUCc -3'
miRNA:   3'- -CCAaCUCCCAgUGCC-CGGG--------CCGGcAG- -5'
10712 5' -61.6 NC_002794.1 + 139878 0.69 0.59112
Target:  5'- aGGUUGAugcaagucucGGuGaUGCGGGCCagccgcaGGCCGUCg -3'
miRNA:   3'- -CCAACU----------CC-CaGUGCCCGGg------CCGGCAG- -5'
10712 5' -61.6 NC_002794.1 + 142719 0.69 0.59112
Target:  5'- uGGUggUGGGGGUCGCGGuaacGCa-GGCCGa- -3'
miRNA:   3'- -CCA--ACUCCCAGUGCC----CGggCCGGCag -5'
10712 5' -61.6 NC_002794.1 + 156015 0.69 0.581566
Target:  5'- ---cGGGGGUCucAUGGGUCgCaGCCGUCg -3'
miRNA:   3'- ccaaCUCCCAG--UGCCCGG-GcCGGCAG- -5'
10712 5' -61.6 NC_002794.1 + 187678 0.69 0.56256
Target:  5'- cGGgcGAugcGGGUCGaGcGGCCCguuGGCCGUCu -3'
miRNA:   3'- -CCaaCU---CCCAGUgC-CCGGG---CCGGCAG- -5'
10712 5' -61.6 NC_002794.1 + 128265 0.7 0.534385
Target:  5'- cGGUcGGGGccgagCGCGGaGCCgaCGGCCGUCu -3'
miRNA:   3'- -CCAaCUCCca---GUGCC-CGG--GCCGGCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.