miRNA display CGI


Results 61 - 80 of 440 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 89579 0.66 0.713331
Target:  5'- cCGGUGucauCGGC-CGUCga--GCCGCGCg -3'
miRNA:   3'- -GCCGCu---GCCGcGCGGaaggUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 60971 0.66 0.713331
Target:  5'- gGGCcuAC-GCGCGCCUccggacccUCCugCGCGa -3'
miRNA:   3'- gCCGc-UGcCGCGCGGA--------AGGugGCGCg -5'
10713 3' -62.7 NC_002794.1 + 107784 0.66 0.713331
Target:  5'- cCGGCGACGaccgcguccGCGCGCauugcgaaCGCCuCGCg -3'
miRNA:   3'- -GCCGCUGC---------CGCGCGgaag----GUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 65146 0.66 0.713331
Target:  5'- uCGGCGACuGgGuCGCCgucccgUCCGUgGCGCc -3'
miRNA:   3'- -GCCGCUGcCgC-GCGGa-----AGGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 65928 0.66 0.713331
Target:  5'- cCGGCGGCGGUG-GCg-UCgGCgGCGg -3'
miRNA:   3'- -GCCGCUGCCGCgCGgaAGgUGgCGCg -5'
10713 3' -62.7 NC_002794.1 + 82156 0.66 0.713331
Target:  5'- cCGGCccGACGGCuccgGCGCCcgagCCAuaaagcCCGgGCg -3'
miRNA:   3'- -GCCG--CUGCCG----CGCGGaa--GGU------GGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 50734 0.66 0.713331
Target:  5'- cCGG-GGCGGC-CGCCUcgacucgcucgUCCGCCccGgGCg -3'
miRNA:   3'- -GCCgCUGCCGcGCGGA-----------AGGUGG--CgCG- -5'
10713 3' -62.7 NC_002794.1 + 182255 0.66 0.713331
Target:  5'- gGaGCGACaGCGCGCCgagUCCcgaGCGg -3'
miRNA:   3'- gC-CGCUGcCGCGCGGa--AGGuggCGCg -5'
10713 3' -62.7 NC_002794.1 + 94299 0.66 0.713331
Target:  5'- gGGCGGCucgGGCGCGCCgaugCaaggACUGCa- -3'
miRNA:   3'- gCCGCUG---CCGCGCGGaa--Gg---UGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 48749 0.67 0.666347
Target:  5'- gGGuCGAacgauCGGUuuGCGCCacauaUUCCACCaGCGCc -3'
miRNA:   3'- gCC-GCU-----GCCG--CGCGG-----AAGGUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 44093 0.67 0.666347
Target:  5'- gGGCaguaACGGUGCGCCgacgagCGCCGCa- -3'
miRNA:   3'- gCCGc---UGCCGCGCGGaag---GUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 56518 0.67 0.666347
Target:  5'- gGGCGcucCGGCGCucguuccggucGCCaUCCGgaGCGCu -3'
miRNA:   3'- gCCGCu--GCCGCG-----------CGGaAGGUggCGCG- -5'
10713 3' -62.7 NC_002794.1 + 70225 0.67 0.666347
Target:  5'- aCGGUcgGGCgGGCG-GCCggCCGCCcCGCa -3'
miRNA:   3'- -GCCG--CUG-CCGCgCGGaaGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 128156 0.67 0.666347
Target:  5'- -cGCGACGGCG-GCUcg-CGCCGCGg -3'
miRNA:   3'- gcCGCUGCCGCgCGGaagGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 179695 0.67 0.666347
Target:  5'- uGGCGGCGGCGaCGgUggcgaCGCCG-GCg -3'
miRNA:   3'- gCCGCUGCCGC-GCgGaag--GUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 130496 0.67 0.666347
Target:  5'- uGGCGcaGCGaGUGCGCCUcgcCCACuCGaGCg -3'
miRNA:   3'- gCCGC--UGC-CGCGCGGAa--GGUG-GCgCG- -5'
10713 3' -62.7 NC_002794.1 + 146547 0.67 0.666347
Target:  5'- -cGCGAcgaaaagcuCGGCGgGCCcgaguuccgagUCCGCCGCGg -3'
miRNA:   3'- gcCGCU---------GCCGCgCGGa----------AGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 14785 0.67 0.666347
Target:  5'- cCGGCGAggcCGGCGUGaCCgcgaccacgUCaCGCCcCGCg -3'
miRNA:   3'- -GCCGCU---GCCGCGC-GGa--------AG-GUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 181542 0.67 0.666347
Target:  5'- cCGGCGGgcCGGCGCuCUcggUCGCCGgGCc -3'
miRNA:   3'- -GCCGCU--GCCGCGcGGaa-GGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 190646 0.67 0.65685
Target:  5'- cCGGCGugugcaggaucACGuCGCGC---CCGCCGCGCc -3'
miRNA:   3'- -GCCGC-----------UGCcGCGCGgaaGGUGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.