miRNA display CGI


Results 81 - 100 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 106396 0.67 0.647336
Target:  5'- gGGCGAacggucggacccCGGCgGCGCCggggCuCAUgGCGCu -3'
miRNA:   3'- gCCGCU------------GCCG-CGCGGaa--G-GUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 119919 0.67 0.647336
Target:  5'- cCGGgGACauccGCacgGCGCCgaucUCCAgCCGCGCc -3'
miRNA:   3'- -GCCgCUGc---CG---CGCGGa---AGGU-GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 13100 0.67 0.647336
Target:  5'- gGGgGACgaGGUGCGUUcggcggggUCGCCGCGCg -3'
miRNA:   3'- gCCgCUG--CCGCGCGGaa------GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 14458 0.67 0.647336
Target:  5'- gGGCGaccgugucgaGCGGCGCGCCgcgCuCGCUGUu- -3'
miRNA:   3'- gCCGC----------UGCCGCGCGGaa-G-GUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 115298 0.67 0.65685
Target:  5'- aCGGgGACcGCuGCGCCgccgUCCgcacggucGCCGCGg -3'
miRNA:   3'- -GCCgCUGcCG-CGCGGa---AGG--------UGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 102470 0.67 0.65685
Target:  5'- gCGGCGcguCGGCGUGCCg---GCCG-GCu -3'
miRNA:   3'- -GCCGCu--GCCGCGCGGaaggUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 181542 0.67 0.666347
Target:  5'- cCGGCGGgcCGGCGCuCUcggUCGCCGgGCc -3'
miRNA:   3'- -GCCGCU--GCCGCGcGGaa-GGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 14785 0.67 0.666347
Target:  5'- cCGGCGAggcCGGCGUGaCCgcgaccacgUCaCGCCcCGCg -3'
miRNA:   3'- -GCCGCU---GCCGCGC-GGa--------AG-GUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 146547 0.67 0.666347
Target:  5'- -cGCGAcgaaaagcuCGGCGgGCCcgaguuccgagUCCGCCGCGg -3'
miRNA:   3'- gcCGCU---------GCCGCgCGGa----------AGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 130496 0.67 0.666347
Target:  5'- uGGCGcaGCGaGUGCGCCUcgcCCACuCGaGCg -3'
miRNA:   3'- gCCGC--UGC-CGCGCGGAa--GGUG-GCgCG- -5'
10713 3' -62.7 NC_002794.1 + 179695 0.67 0.666347
Target:  5'- uGGCGGCGGCGaCGgUggcgaCGCCG-GCg -3'
miRNA:   3'- gCCGCUGCCGC-GCgGaag--GUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 128156 0.67 0.666347
Target:  5'- -cGCGACGGCG-GCUcg-CGCCGCGg -3'
miRNA:   3'- gcCGCUGCCGCgCGGaagGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 70225 0.67 0.666347
Target:  5'- aCGGUcgGGCgGGCG-GCCggCCGCCcCGCa -3'
miRNA:   3'- -GCCG--CUG-CCGCgCGGaaGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 56518 0.67 0.666347
Target:  5'- gGGCGcucCGGCGCucguuccggucGCCaUCCGgaGCGCu -3'
miRNA:   3'- gCCGCu--GCCGCG-----------CGGaAGGUggCGCG- -5'
10713 3' -62.7 NC_002794.1 + 44093 0.67 0.666347
Target:  5'- gGGCaguaACGGUGCGCCgacgagCGCCGCa- -3'
miRNA:   3'- gCCGc---UGCCGCGCGGaag---GUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 48749 0.67 0.666347
Target:  5'- gGGuCGAacgauCGGUuuGCGCCacauaUUCCACCaGCGCc -3'
miRNA:   3'- gCC-GCU-----GCCG--CGCGG-----AAGGUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 190646 0.67 0.65685
Target:  5'- cCGGCGugugcaggaucACGuCGCGC---CCGCCGCGCc -3'
miRNA:   3'- -GCCGC-----------UGCcGCGCGgaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 190512 0.67 0.65685
Target:  5'- aCGGCGugcccaGCcGCGUGCCgaucgucgUCCACCaGCGg -3'
miRNA:   3'- -GCCGC------UGcCGCGCGGa-------AGGUGG-CGCg -5'
10713 3' -62.7 NC_002794.1 + 125825 0.67 0.65685
Target:  5'- -uGCGuccuCGGCGC-CCUgCUGCUGCGCu -3'
miRNA:   3'- gcCGCu---GCCGCGcGGAaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 37767 0.67 0.65685
Target:  5'- cCGGCGggaGCGGC-CGUCgucgUCgGCCGCagGCg -3'
miRNA:   3'- -GCCGC---UGCCGcGCGGa---AGgUGGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.