Results 101 - 120 of 440 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 128156 | 0.67 | 0.666347 |
Target: 5'- -cGCGACGGCG-GCUcg-CGCCGCGg -3' miRNA: 3'- gcCGCUGCCGCgCGGaagGUGGCGCg -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 179695 | 0.67 | 0.666347 |
Target: 5'- uGGCGGCGGCGaCGgUggcgaCGCCG-GCg -3' miRNA: 3'- gCCGCUGCCGC-GCgGaag--GUGGCgCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 130496 | 0.67 | 0.666347 |
Target: 5'- uGGCGcaGCGaGUGCGCCUcgcCCACuCGaGCg -3' miRNA: 3'- gCCGC--UGC-CGCGCGGAa--GGUG-GCgCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 146547 | 0.67 | 0.666347 |
Target: 5'- -cGCGAcgaaaagcuCGGCGgGCCcgaguuccgagUCCGCCGCGg -3' miRNA: 3'- gcCGCU---------GCCGCgCGGa----------AGGUGGCGCg -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 14785 | 0.67 | 0.666347 |
Target: 5'- cCGGCGAggcCGGCGUGaCCgcgaccacgUCaCGCCcCGCg -3' miRNA: 3'- -GCCGCU---GCCGCGC-GGa--------AG-GUGGcGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 181542 | 0.67 | 0.666347 |
Target: 5'- cCGGCGGgcCGGCGCuCUcggUCGCCGgGCc -3' miRNA: 3'- -GCCGCU--GCCGCGcGGaa-GGUGGCgCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 15210 | 0.67 | 0.666347 |
Target: 5'- -cGCGAUGGCgGCGUCccCCGuCCGCGg -3' miRNA: 3'- gcCGCUGCCG-CGCGGaaGGU-GGCGCg -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 190646 | 0.67 | 0.65685 |
Target: 5'- cCGGCGugugcaggaucACGuCGCGC---CCGCCGCGCc -3' miRNA: 3'- -GCCGC-----------UGCcGCGCGgaaGGUGGCGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 190512 | 0.67 | 0.65685 |
Target: 5'- aCGGCGugcccaGCcGCGUGCCgaucgucgUCCACCaGCGg -3' miRNA: 3'- -GCCGC------UGcCGCGCGGa-------AGGUGG-CGCg -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 93035 | 0.67 | 0.653997 |
Target: 5'- cCGGUGcGCGGCugccuggccuuccuGCucuacGCCUUCCACgaGCGCc -3' miRNA: 3'- -GCCGC-UGCCG--------------CG-----CGGAAGGUGg-CGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 178106 | 0.67 | 0.655899 |
Target: 5'- aCGGUGuCGGgGUGCCggucguaauaaagUUUCACCGCu- -3' miRNA: 3'- -GCCGCuGCCgCGCGG-------------AAGGUGGCGcg -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 117081 | 0.67 | 0.65685 |
Target: 5'- aCGGCGgcaGCGGCGUGUccaCUUCgGCCGaCa- -3' miRNA: 3'- -GCCGC---UGCCGCGCG---GAAGgUGGC-Gcg -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 183599 | 0.67 | 0.65685 |
Target: 5'- gGGCGGaggggggcCGcGCGCgGCCggcgCCcCCGCGCc -3' miRNA: 3'- gCCGCU--------GC-CGCG-CGGaa--GGuGGCGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 186838 | 0.67 | 0.65685 |
Target: 5'- aGGCgcccGACaGCGCGCgggcgCUGCCGUGCa -3' miRNA: 3'- gCCG----CUGcCGCGCGgaa--GGUGGCGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 23962 | 0.67 | 0.65685 |
Target: 5'- uGGCuccgagccaGCGGCGagGCCggcgCCACCGuCGCu -3' miRNA: 3'- gCCGc--------UGCCGCg-CGGaa--GGUGGC-GCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 183205 | 0.67 | 0.65685 |
Target: 5'- aCGcCGGCGGCGCGUUcgUCGCCaGCGa -3' miRNA: 3'- -GCcGCUGCCGCGCGGaaGGUGG-CGCg -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 115298 | 0.67 | 0.65685 |
Target: 5'- aCGGgGACcGCuGCGCCgccgUCCgcacggucGCCGCGg -3' miRNA: 3'- -GCCgCUGcCG-CGCGGa---AGG--------UGGCGCg -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 102470 | 0.67 | 0.65685 |
Target: 5'- gCGGCGcguCGGCGUGCCg---GCCG-GCu -3' miRNA: 3'- -GCCGCu--GCCGCGCGGaaggUGGCgCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 37767 | 0.67 | 0.65685 |
Target: 5'- cCGGCGggaGCGGC-CGUCgucgUCgGCCGCagGCg -3' miRNA: 3'- -GCCGC---UGCCGcGCGGa---AGgUGGCG--CG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 125825 | 0.67 | 0.65685 |
Target: 5'- -uGCGuccuCGGCGC-CCUgCUGCUGCGCu -3' miRNA: 3'- gcCGCu---GCCGCGcGGAaGGUGGCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home