miRNA display CGI


Results 61 - 80 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 184161 0.74 0.283541
Target:  5'- cCGGCGACGGCGUcuccacCCga-CACCGCGg -3'
miRNA:   3'- -GCCGCUGCCGCGc-----GGaagGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 113868 0.74 0.271378
Target:  5'- cCGGCca-GGCGCGCUcggCCGCgGCGCg -3'
miRNA:   3'- -GCCGcugCCGCGCGGaa-GGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 62501 0.74 0.294852
Target:  5'- aCGGCgGGCGGCGcCGCCggcgccuccgcCCACCGUGa -3'
miRNA:   3'- -GCCG-CUGCCGC-GCGGaa---------GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 138924 0.74 0.271378
Target:  5'- gCGGCGGauggucugcCGGUGCGCCc-CCACCGUGg -3'
miRNA:   3'- -GCCGCU---------GCCGCGCGGaaGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 92008 0.74 0.283541
Target:  5'- aCGGCGGCaGCGCGCuCUacgagcaccuggUgCACUGCGCc -3'
miRNA:   3'- -GCCGCUGcCGCGCG-GA------------AgGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 31333 0.74 0.302587
Target:  5'- uCGGCu-CGGCGCccGCCgugUCCGCCGCccGCu -3'
miRNA:   3'- -GCCGcuGCCGCG--CGGa--AGGUGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 114034 0.74 0.277406
Target:  5'- gGGCaGCGGC-CGCCcguagUCGCCGCGCa -3'
miRNA:   3'- gCCGcUGCCGcGCGGaa---GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 2098 0.74 0.283541
Target:  5'- aCGGCGAcCGGgGCGUgUUCUAucuacgguCCGCGCc -3'
miRNA:   3'- -GCCGCU-GCCgCGCGgAAGGU--------GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 115054 0.74 0.296131
Target:  5'- gCGGCgGGCGGCaGCGCCguccagUCCACgGCcucgGCg -3'
miRNA:   3'- -GCCG-CUGCCG-CGCGGa-----AGGUGgCG----CG- -5'
10713 3' -62.7 NC_002794.1 + 75382 0.74 0.296131
Target:  5'- cCGGCGGCGGCG-GCCUcUCC-CCGUc- -3'
miRNA:   3'- -GCCGCUGCCGCgCGGA-AGGuGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 100452 0.74 0.296131
Target:  5'- uGaGCGGCGGCgGCGCCUUCC-CgGUGg -3'
miRNA:   3'- gC-CGCUGCCG-CGCGGAAGGuGgCGCg -5'
10713 3' -62.7 NC_002794.1 + 47959 0.74 0.283541
Target:  5'- cCGGCGcCGGCuGgGCga-CCGCCGCGCg -3'
miRNA:   3'- -GCCGCuGCCG-CgCGgaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 58547 0.74 0.26959
Target:  5'- gCGGCGcgcgcgcuGCuGGCGCGCugcgcgaacgccuaCUUCCACCaGCGCg -3'
miRNA:   3'- -GCCGC--------UG-CCGCGCG--------------GAAGGUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 184526 0.74 0.289782
Target:  5'- gCGGCG-CgGGCGaCGCCgcCCACCGcCGCc -3'
miRNA:   3'- -GCCGCuG-CCGC-GCGGaaGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 76908 0.74 0.265456
Target:  5'- aCGGCGACcaGCGCucGCgaUCCAcCCGCGCg -3'
miRNA:   3'- -GCCGCUGc-CGCG--CGgaAGGU-GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 58068 0.74 0.292309
Target:  5'- cCGGCGGCGGCgggacgggcggcccgGCGCCcgcgcUCgACCGCuGCg -3'
miRNA:   3'- -GCCGCUGCCG---------------CGCGGa----AGgUGGCG-CG- -5'
10713 3' -62.7 NC_002794.1 + 127359 0.74 0.265456
Target:  5'- gCGGCGGCGGCGCGg---CCGCuCGUGUc -3'
miRNA:   3'- -GCCGCUGCCGCGCggaaGGUG-GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 187464 0.74 0.300638
Target:  5'- uCGGCGucgcuCGGCGCGCg--CCgggccgaggacgagGCCGCGCa -3'
miRNA:   3'- -GCCGCu----GCCGCGCGgaaGG--------------UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 66745 0.74 0.296131
Target:  5'- uGGCGGCGGCGCGUa--CgACCGCu- -3'
miRNA:   3'- gCCGCUGCCGCGCGgaaGgUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 190160 0.74 0.289782
Target:  5'- uGGCGGCGGCuCuCCUcgaacacCCGCCGCGCc -3'
miRNA:   3'- gCCGCUGCCGcGcGGAa------GGUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.